| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159896834
Identifier: 159896834
GI number: 159896834
Start: 359280
End: 361604
Strand: Direct
Name: 159896834
Synonym: Haur_0301
Alternate gene names: NA
Gene position: 359280-361604 (Clockwise)
Preceding gene: 159896833
Following gene: 159896836
Centisome position: 5.66
GC content: 53.12
Gene sequence:
>2325_bases ATGACCGAACAACGCCACCATTCCTCAATTCCTCTCGCTGCGTGGCAACGCCCACTTGGCCTCGATTATCCGAATGCGGC GATTGCCGCCCACGATCATGGGCCGATTATTGACGATGGAGTCTTTCATGGTTTGCCAATTGGTGGCATGGGTAGCGGGG CGATTGGCCGCAACTTTCGCGGCGATTGGTCACGCTGGCATTTAGAGGTTGGCAAGCACGTACATCGCAGCGTTTGGCCG AATCAATGGAGTGTTTTCTGGCAAACCGCCAGTCAACAAGCCGCCCAAGTTTTATGCACGACCCAACCAGATACCGATGA ATTGAGTAGCTGGAACTGGAATTATCCAGTTGGCGCTGGCAATTATCATGCACTTTTCCCCCGCGCTTGGTTCGATTATC AACACCCCGATTGGCCACTGGAATTGGTTCAAGAGCAATTTTCGCCTGTTTTGGCGGGTAATCTCAAGGAAAGCAGCTTT CCCGTTGGCGTGTTTACCTGGCGCGTAACCAATCGTGGCAGCGAAACCGTGCGTTTGGGATTGATGCTGACATGGGAACA TACCCGTGCGGTCGAAGCTGCTGGCTTAAGCTTGCAACGCCAACACAGCGCTTGGAACGACGGTAACACCAGCGGCGTAA CCTTGACCCAAACCAGCGATCAAGCCTTGAGCAGCCATAATGGCACTTGGGCTTTGGCGGTGCAAGCCCCCGAATCGGCC AGCGTCAGTCAATGGACATGCTGGGATGTTGCGCAAGATGCTGCCGCGCTCTGGCAAGATTTTGCCAGTGACGGCCAATT AGCCGACTATCCAACCAGCCAAAAAGTTGCTGCCGATCAACGCAGCGCAACGGCAATTGCCGTCACCCTCGAATTAGCGC CTGGTGCTAGCGCCGTGATTCCCTTCAGCCTCGCTTGGGATTTTCCAATTGTCGAGTTTGCTGATCAAAGCCGCTGGTAC AAGCGCTATACCCGTTTTTGGGGCACGAACGGCGATCAAGCTCAAGCCTTGGCGGTTGCTAGTTTGACCAATGCTGATGC TTGGCGTACAGCAATTGAAGCATGGCAAAACCCCATTCTTGCTGATGATCAACGGCCATTTTGGTATAAATCTGCTCTTT TTAACGAACTCTATTATTTGGTTGATGGTGGTACGTTGTGGGTTGATCGGGCGGTTGGCGGGCCGGAGCCTGCGGCTGAT GATGTGGGCTTGTTCAGCTACCTCGAATGCTACGACTACCCGTTCTATGGCACGCTCGATGTGTCGTTCTACAGCTCGTG GAGCATCTTGGCCTTGTGGCCAGAGCTTGAACGCGGCGAGATTTTGGCCTTCTCCAAAACGGTTAACGATGCTGATGATA CCGTTGTCACAATTGTGGCAACTCAAGTCCCAGCAATTCGCAAGGCCGCTGGCGCATTGCCGCATGATCTTGGTGCGCCC AAAGAGCAACCATTAATCAAAACCAATGCCTACGACTTCCAAGATATCAATAACTGGAAAGATCTCAACCTCAAGTATAT TTTGCGAATCTATCGTGATGTGAGCTTGTGGAACGATCAGGCCATGCTGGAAGCAACTTGGGACACAATTCCAACTGCTT TAGAATATGTGCATCAATTCGATAGTGATGGCGATGGCTTGCTCGACCATAGTGGAGCCGACCAAACCTACGATACCTGG GCCATGAGCGGCGCGGCCAGCTATTCGGCAAGCTTGCTGATTTGTGCCTTGGAAGCTGCGATTCGCCTAGCCCAACGCAT GGGCGACCATGCCCAAGCCGATGCTTGGAGTGAATGGCTGGCCGCGGCTCGCCAAAGTTTTGAAACTAAGCTTTGGAATG GTACTTACTTCCGCTATCACACCGCTGATACTGATTTGCGCGAAGTGATTATGGCCGATCAATTGGTGGGCCAATGGTAT GCAGGCGCAATTGGCTTGCCAGCGGTTGCTCCACGCGAGATGATTCGCTCGGCCTTGCAAACGGTCTATCGCTTCAACGT CATGCAATATGCCAACGGCGCATTGGGTGCAGTCAACGGCATGCATCCAGATGGCACGGTTGATACCAGCTCCAACCAAG CCAGCGAAGTTTGGAGCGGCACGACCTATGCGATTGCGGCCATGATGCTGCAAGAAGGGCTTGATCTTGAAGGCTGGCAA ACCGCTTGGGGAGCCTATAACGCCACCTATAATGAACTTGGATTGTGGTTTCGCACACCGGAAGCATGGGGCATCGAACG AACTTTCCGTGCCAGCATGTACATGCGACCACAATCAATCTGGGCGATTGAGCATGCCTTAGCGGTGCGTGCTAAAAACG CCTGA
Upstream 100 bases:
>100_bases AAAGGCGTGTAGACTTTGGCGTTGCTGAGGTCTGCACGCCGATTTGTATCTGTATCGATCAGTGTTTGGGCACAGCACCC AAACATAGGAGCACAGGATC
Downstream 100 bases:
>100_bases TCAGCGGACAAGCCTAGCTTGTCGGATCTCCTCGCGTCGCCTTGACGCAACCATGCCTCAAAACCACGCTGGATTCTGGC CCAGCGTGGTTTCGTTCTAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 774; Mature: 773
Protein sequence:
>774_residues MTEQRHHSSIPLAAWQRPLGLDYPNAAIAAHDHGPIIDDGVFHGLPIGGMGSGAIGRNFRGDWSRWHLEVGKHVHRSVWP NQWSVFWQTASQQAAQVLCTTQPDTDELSSWNWNYPVGAGNYHALFPRAWFDYQHPDWPLELVQEQFSPVLAGNLKESSF PVGVFTWRVTNRGSETVRLGLMLTWEHTRAVEAAGLSLQRQHSAWNDGNTSGVTLTQTSDQALSSHNGTWALAVQAPESA SVSQWTCWDVAQDAAALWQDFASDGQLADYPTSQKVAADQRSATAIAVTLELAPGASAVIPFSLAWDFPIVEFADQSRWY KRYTRFWGTNGDQAQALAVASLTNADAWRTAIEAWQNPILADDQRPFWYKSALFNELYYLVDGGTLWVDRAVGGPEPAAD DVGLFSYLECYDYPFYGTLDVSFYSSWSILALWPELERGEILAFSKTVNDADDTVVTIVATQVPAIRKAAGALPHDLGAP KEQPLIKTNAYDFQDINNWKDLNLKYILRIYRDVSLWNDQAMLEATWDTIPTALEYVHQFDSDGDGLLDHSGADQTYDTW AMSGAASYSASLLICALEAAIRLAQRMGDHAQADAWSEWLAAARQSFETKLWNGTYFRYHTADTDLREVIMADQLVGQWY AGAIGLPAVAPREMIRSALQTVYRFNVMQYANGALGAVNGMHPDGTVDTSSNQASEVWSGTTYAIAAMMLQEGLDLEGWQ TAWGAYNATYNELGLWFRTPEAWGIERTFRASMYMRPQSIWAIEHALAVRAKNA
Sequences:
>Translated_774_residues MTEQRHHSSIPLAAWQRPLGLDYPNAAIAAHDHGPIIDDGVFHGLPIGGMGSGAIGRNFRGDWSRWHLEVGKHVHRSVWP NQWSVFWQTASQQAAQVLCTTQPDTDELSSWNWNYPVGAGNYHALFPRAWFDYQHPDWPLELVQEQFSPVLAGNLKESSF PVGVFTWRVTNRGSETVRLGLMLTWEHTRAVEAAGLSLQRQHSAWNDGNTSGVTLTQTSDQALSSHNGTWALAVQAPESA SVSQWTCWDVAQDAAALWQDFASDGQLADYPTSQKVAADQRSATAIAVTLELAPGASAVIPFSLAWDFPIVEFADQSRWY KRYTRFWGTNGDQAQALAVASLTNADAWRTAIEAWQNPILADDQRPFWYKSALFNELYYLVDGGTLWVDRAVGGPEPAAD DVGLFSYLECYDYPFYGTLDVSFYSSWSILALWPELERGEILAFSKTVNDADDTVVTIVATQVPAIRKAAGALPHDLGAP KEQPLIKTNAYDFQDINNWKDLNLKYILRIYRDVSLWNDQAMLEATWDTIPTALEYVHQFDSDGDGLLDHSGADQTYDTW AMSGAASYSASLLICALEAAIRLAQRMGDHAQADAWSEWLAAARQSFETKLWNGTYFRYHTADTDLREVIMADQLVGQWY AGAIGLPAVAPREMIRSALQTVYRFNVMQYANGALGAVNGMHPDGTVDTSSNQASEVWSGTTYAIAAMMLQEGLDLEGWQ TAWGAYNATYNELGLWFRTPEAWGIERTFRASMYMRPQSIWAIEHALAVRAKNA >Mature_773_residues TEQRHHSSIPLAAWQRPLGLDYPNAAIAAHDHGPIIDDGVFHGLPIGGMGSGAIGRNFRGDWSRWHLEVGKHVHRSVWPN QWSVFWQTASQQAAQVLCTTQPDTDELSSWNWNYPVGAGNYHALFPRAWFDYQHPDWPLELVQEQFSPVLAGNLKESSFP VGVFTWRVTNRGSETVRLGLMLTWEHTRAVEAAGLSLQRQHSAWNDGNTSGVTLTQTSDQALSSHNGTWALAVQAPESAS VSQWTCWDVAQDAAALWQDFASDGQLADYPTSQKVAADQRSATAIAVTLELAPGASAVIPFSLAWDFPIVEFADQSRWYK RYTRFWGTNGDQAQALAVASLTNADAWRTAIEAWQNPILADDQRPFWYKSALFNELYYLVDGGTLWVDRAVGGPEPAADD VGLFSYLECYDYPFYGTLDVSFYSSWSILALWPELERGEILAFSKTVNDADDTVVTIVATQVPAIRKAAGALPHDLGAPK EQPLIKTNAYDFQDINNWKDLNLKYILRIYRDVSLWNDQAMLEATWDTIPTALEYVHQFDSDGDGLLDHSGADQTYDTWA MSGAASYSASLLICALEAAIRLAQRMGDHAQADAWSEWLAAARQSFETKLWNGTYFRYHTADTDLREVIMADQLVGQWYA GAIGLPAVAPREMIRSALQTVYRFNVMQYANGALGAVNGMHPDGTVDTSSNQASEVWSGTTYAIAAMMLQEGLDLEGWQT AWGAYNATYNELGLWFRTPEAWGIERTFRASMYMRPQSIWAIEHALAVRAKNA
Specific function: Unknown
COG id: COG4354
COG function: function code G; Predicted bile acid beta-glucosidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI24308251, Length=744, Percent_Identity=38.3064516129032, Blast_Score=473, Evalue=1e-133, Organism=Caenorhabditis elegans, GI71992715, Length=774, Percent_Identity=35.9173126614987, Blast_Score=431, Evalue=1e-121, Organism=Caenorhabditis elegans, GI71992723, Length=774, Percent_Identity=35.9173126614987, Blast_Score=431, Evalue=1e-120, Organism=Caenorhabditis elegans, GI71992731, Length=774, Percent_Identity=35.9173126614987, Blast_Score=430, Evalue=1e-120, Organism=Caenorhabditis elegans, GI17562976, Length=723, Percent_Identity=32.088520055325, Blast_Score=356, Evalue=3e-98, Organism=Drosophila melanogaster, GI45552032, Length=517, Percent_Identity=29.4003868471954, Blast_Score=252, Evalue=9e-67,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 86230; Mature: 86099
Theoretical pI: Translated: 4.56; Mature: 4.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEQRHHSSIPLAAWQRPLGLDYPNAAIAAHDHGPIIDDGVFHGLPIGGMGSGAIGRNFR CCCCCCCCCCCHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GDWSRWHLEVGKHVHRSVWPNQWSVFWQTASQQAAQVLCTTQPDTDELSSWNWNYPVGAG CCHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHEEEECCCCCCHHHCCCCCCCCCCCC NYHALFPRAWFDYQHPDWPLELVQEQFSPVLAGNLKESSFPVGVFTWRVTNRGSETVRLG CCEEECCHHHCCCCCCCCHHHHHHHHCCHHHCCCCCCCCCCEEEEEEEEECCCCCEEEEE LMLTWEHTRAVEAAGLSLQRQHSAWNDGNTSGVTLTQTSDQALSSHNGTWALAVQAPESA EEEEECHHHHHHHHCCCHHHHHCCCCCCCCCCEEEEECCHHHHHCCCCEEEEEEECCCCC SVSQWTCWDVAQDAAALWQDFASDGQLADYPTSQKVAADQRSATAIAVTLELAPGASAVI CCCCEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCEEEEEEEEECCCCCEEE PFSLAWDFPIVEFADQSRWYKRYTRFWGTNGDQAQALAVASLTNADAWRTAIEAWQNPIL EEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEEHHCCCHHHHHHHHHHCCCCC ADDQRPFWYKSALFNELYYLVDGGTLWVDRAVGGPEPAADDVGLFSYLECYDYPFYGTLD CCCCCCHHHHHHHHHHEEEEEECCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEEE VSFYSSWSILALWPELERGEILAFSKTVNDADDTVVTIVATQVPAIRKAAGALPHDLGAP EEEECCCEEEEECCCCCCCCEEEEECCCCCCCCCEEEEEECCCCHHHHHHCCCCCCCCCC KEQPLIKTNAYDFQDINNWKDLNLKYILRIYRDVSLWNDQAMLEATWDTIPTALEYVHQF CCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHH DSDGDGLLDHSGADQTYDTWAMSGAASYSASLLICALEAAIRLAQRMGDHAQADAWSEWL CCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH AAARQSFETKLWNGTYFRYHTADTDLREVIMADQLVGQWYAGAIGLPAVAPREMIRSALQ HHHHHHHHHEECCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH TVYRFNVMQYANGALGAVNGMHPDGTVDTSSNQASEVWSGTTYAIAAMMLQEGLDLEGWQ HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCCH TAWGAYNATYNELGLWFRTPEAWGIERTFRASMYMRPQSIWAIEHALAVRAKNA HHCCCCCCCHHHCEEEEECCCCCCCHHHHHHHHEECCHHHHHHHHHHHHEECCC >Mature Secondary Structure TEQRHHSSIPLAAWQRPLGLDYPNAAIAAHDHGPIIDDGVFHGLPIGGMGSGAIGRNFR CCCCCCCCCCHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GDWSRWHLEVGKHVHRSVWPNQWSVFWQTASQQAAQVLCTTQPDTDELSSWNWNYPVGAG CCHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHEEEECCCCCCHHHCCCCCCCCCCCC NYHALFPRAWFDYQHPDWPLELVQEQFSPVLAGNLKESSFPVGVFTWRVTNRGSETVRLG CCEEECCHHHCCCCCCCCHHHHHHHHCCHHHCCCCCCCCCCEEEEEEEEECCCCCEEEEE LMLTWEHTRAVEAAGLSLQRQHSAWNDGNTSGVTLTQTSDQALSSHNGTWALAVQAPESA EEEEECHHHHHHHHCCCHHHHHCCCCCCCCCCEEEEECCHHHHHCCCCEEEEEEECCCCC SVSQWTCWDVAQDAAALWQDFASDGQLADYPTSQKVAADQRSATAIAVTLELAPGASAVI CCCCEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCEEEEEEEEECCCCCEEE PFSLAWDFPIVEFADQSRWYKRYTRFWGTNGDQAQALAVASLTNADAWRTAIEAWQNPIL EEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEEHHCCCHHHHHHHHHHCCCCC ADDQRPFWYKSALFNELYYLVDGGTLWVDRAVGGPEPAADDVGLFSYLECYDYPFYGTLD CCCCCCHHHHHHHHHHEEEEEECCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEEE VSFYSSWSILALWPELERGEILAFSKTVNDADDTVVTIVATQVPAIRKAAGALPHDLGAP EEEECCCEEEEECCCCCCCCEEEEECCCCCCCCCEEEEEECCCCHHHHHHCCCCCCCCCC KEQPLIKTNAYDFQDINNWKDLNLKYILRIYRDVSLWNDQAMLEATWDTIPTALEYVHQF CCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHH DSDGDGLLDHSGADQTYDTWAMSGAASYSASLLICALEAAIRLAQRMGDHAQADAWSEWL CCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH AAARQSFETKLWNGTYFRYHTADTDLREVIMADQLVGQWYAGAIGLPAVAPREMIRSALQ HHHHHHHHHEECCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH TVYRFNVMQYANGALGAVNGMHPDGTVDTSSNQASEVWSGTTYAIAAMMLQEGLDLEGWQ HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCCH TAWGAYNATYNELGLWFRTPEAWGIERTFRASMYMRPQSIWAIEHALAVRAKNA HHCCCCCCCHHHCEEEEECCCCCCCHHHHHHHHEECCHHHHHHHHHHHHEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA