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The map label for this gene is ydfL [H]

Identifier: 159896780

GI number: 159896780

Start: 288335

End: 289198

Strand: Reverse

Name: ydfL [H]

Synonym: Haur_0247

Alternate gene names: 159896780

Gene position: 289198-288335 (Counterclockwise)

Preceding gene: 159896782

Following gene: 159896779

Centisome position: 4.56

GC content: 48.84

Gene sequence:

>864_bases
ATGTTCAAGATTGGTGAATTTTCGCGTTTGGCTCAAGTTTCGGTGCGGATGCTACGCCATTACGACAAATTAGGCTTGCT
CATTCCCAACCAAATTGATCAATGGACTGGCTATCGTTACTACTCAGTTGAGCAATTGCCACGGCTGCATCGCATTGTGG
CACTCAATGGCCTGGGGCTAAGTCTCCAACAAATCGGCGAATTATTGAACCACGATGATCTTTCGGCTGATCAACTGCGT
GGGATGTTGCGCCTGCAAGAAGCCCGCTTAACTGCTGAACTGGCCAAAAAGCAAGCCCAACTAGCCGAAGTCAGTGCTCG
CTTGGCCCAAATTGAACATGAACAAGAGCCATGGCCCTATGCCATGATGCTCAAATCGACCGCTGCTGAGCCGATTGTCA
GCATGCGAGCGATTGTACCAAGCCTTGATCAAATGGGTTATTACTGTCATCGGCTTTATGCATCGCTGTATCAACAAGTG
CAACAGCAGCGCATTCCAATCCTTGCCCAAGAAATTACGATCTATCACAACGAGGAGTTTATCGAAACCGATATTGGAGT
CGAAGTAGCAGTCAGTTTGGCCGAGCACAATATGGCTCAATTGCCCGATAGCAACATCAAGTTTCAAACCCTGCCTAGCC
TCGAATTGGCCGCAACCCTCGCTTTCGAAGGCAGTTTTAGCGAAATTCACGCCGCCGCTTTGGCGCTGTTGGGCTGGGTT
GGCTTGCACAACTACGAAATGATTGGGCCACTGCGCGAATTTCATCGTTCAGGGCCAGCCCACAATGCTCAAGGCGGCAT
TCAAGAGCCAGCGGTAATTGAATTACAACTACCAATCAAACTACGAGATAATGAAAGGAATTAA

Upstream 100 bases:

>100_bases
AACTCCTTACACTGTAAATCTATTTTAAAAATTGCTGCTTGACTCTGCCACTGTGATAGGGTGTAGCATCAACGACATCA
GATTTACAAGGATGGTTGCT

Downstream 100 bases:

>100_bases
GATGATCGCCACCAAAGCCTATCCTACAACCAACCAAACTGAACGAAGCATGACCAGCACCTATCGCTGGGCAGCCGGAT
TACTTTTCGCTCAATTTAGC

Product: MerR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MFKIGEFSRLAQVSVRMLRHYDKLGLLIPNQIDQWTGYRYYSVEQLPRLHRIVALNGLGLSLQQIGELLNHDDLSADQLR
GMLRLQEARLTAELAKKQAQLAEVSARLAQIEHEQEPWPYAMMLKSTAAEPIVSMRAIVPSLDQMGYYCHRLYASLYQQV
QQQRIPILAQEITIYHNEEFIETDIGVEVAVSLAEHNMAQLPDSNIKFQTLPSLELAATLAFEGSFSEIHAAALALLGWV
GLHNYEMIGPLREFHRSGPAHNAQGGIQEPAVIELQLPIKLRDNERN

Sequences:

>Translated_287_residues
MFKIGEFSRLAQVSVRMLRHYDKLGLLIPNQIDQWTGYRYYSVEQLPRLHRIVALNGLGLSLQQIGELLNHDDLSADQLR
GMLRLQEARLTAELAKKQAQLAEVSARLAQIEHEQEPWPYAMMLKSTAAEPIVSMRAIVPSLDQMGYYCHRLYASLYQQV
QQQRIPILAQEITIYHNEEFIETDIGVEVAVSLAEHNMAQLPDSNIKFQTLPSLELAATLAFEGSFSEIHAAALALLGWV
GLHNYEMIGPLREFHRSGPAHNAQGGIQEPAVIELQLPIKLRDNERN
>Mature_287_residues
MFKIGEFSRLAQVSVRMLRHYDKLGLLIPNQIDQWTGYRYYSVEQLPRLHRIVALNGLGLSLQQIGELLNHDDLSADQLR
GMLRLQEARLTAELAKKQAQLAEVSARLAQIEHEQEPWPYAMMLKSTAAEPIVSMRAIVPSLDQMGYYCHRLYASLYQQV
QQQRIPILAQEITIYHNEEFIETDIGVEVAVSLAEHNMAQLPDSNIKFQTLPSLELAATLAFEGSFSEIHAAALALLGWV
GLHNYEMIGPLREFHRSGPAHNAQGGIQEPAVIELQLPIKLRDNERN

Specific function: Zinc-Responsive Transcriptional Regulator Of Znta. [C]

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR009061
- InterPro:   IPR000551
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind; PF00376 MerR [H]

EC number: NA

Molecular weight: Translated: 32514; Mature: 32514

Theoretical pI: Translated: 5.95; Mature: 5.95

Prosite motif: PS00552 HTH_MERR_1 ; PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKIGEFSRLAQVSVRMLRHYDKLGLLIPNQIDQWTGYRYYSVEQLPRLHRIVALNGLGL
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCEEEEHHHHHHHHHHHHCCCCCC
SLQQIGELLNHDDLSADQLRGMLRLQEARLTAELAKKQAQLAEVSARLAQIEHEQEPWPY
CHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
AMMLKSTAAEPIVSMRAIVPSLDQMGYYCHRLYASLYQQVQQQRIPILAQEITIYHNEEF
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHEEEEECCHH
IETDIGVEVAVSLAEHNMAQLPDSNIKFQTLPSLELAATLAFEGSFSEIHAAALALLGWV
HHHCCCHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHEEECCCHHHHHHHHHHHHHHH
GLHNYEMIGPLREFHRSGPAHNAQGGIQEPAVIELQLPIKLRDNERN
HCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECEEECCCCCC
>Mature Secondary Structure
MFKIGEFSRLAQVSVRMLRHYDKLGLLIPNQIDQWTGYRYYSVEQLPRLHRIVALNGLGL
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCEEEEHHHHHHHHHHHHCCCCCC
SLQQIGELLNHDDLSADQLRGMLRLQEARLTAELAKKQAQLAEVSARLAQIEHEQEPWPY
CHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
AMMLKSTAAEPIVSMRAIVPSLDQMGYYCHRLYASLYQQVQQQRIPILAQEITIYHNEEF
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHEEEEECCHH
IETDIGVEVAVSLAEHNMAQLPDSNIKFQTLPSLELAATLAFEGSFSEIHAAALALLGWV
HHHCCCHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHEEECCCHHHHHHHHHHHHHHH
GLHNYEMIGPLREFHRSGPAHNAQGGIQEPAVIELQLPIKLRDNERN
HCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]