Click here to switch to the map view.

The map label for this gene is rtcB [H]

Identifier: 159896738

GI number: 159896738

Start: 239628

End: 240950

Strand: Reverse

Name: rtcB [H]

Synonym: Haur_0205

Alternate gene names: 159896738

Gene position: 240950-239628 (Counterclockwise)

Preceding gene: 159896739

Following gene: 159896737

Centisome position: 3.8

GC content: 53.89

Gene sequence:

>1323_bases
ATGAAACTCAACGTTTTGCTCAAGCCATGGCGTGGCGATAAACGCTTCACGGCCATTGCCAAGTATGCCGCCGCCTTGAA
AAAAAGCGGCTCCAAGGATTTGCAAATTGTGGCCCAAGTCGAGGCCGAATTTGGCAAGCCCACCGAATTAGCTCGGATCA
ACGAGCAACCACAACCCTACAAGGCTTATGGCCAAATTGGGGTTGATATTGAAGCCGCCGCTTTGGAGCAATTGCTGTTG
GCCTTGCGCCTGCCAATTGCCGCCCAAGGAGCGTTGATGCCCGACGCTCACCCGGGCTTTGCCTTGCCGATTGGCGGGGT
TTTTGCCGCTCACAACGCCGTCTCGCCCATGATGGTTGGGGTCGATATCGGCTGCCGTATGCATCTCACGATTTTTGCTG
AAGCACCCATGGAAATCCAACGCCAGCGTGAACAATTATTCCGTGATTTGGCTGACGTGACGGTGTTTGGCTCAGGCGCA
AGTCGCAAACGCGGGCCAGATCATCCAATTTTAGGCATCAAACACTGGAATATCACCGCTCAAACCCGCAGCTTGCGCGA
AAAAGCCATCGCGCAACTTGGCACAAGCGGCGGCGGCAACCACTTTGCCAATATCGTCGTTGGCGAACGCATTGGCGAAA
ACGATTTGCCGCGCCAATTTGTTGGCTTGCTGACCCATAGCGGCTCGCGCGGAGTTGGTTATGCGATTGCCAAGCACTAT
AGCAATATCGCCGTGCAAGAAACTGCACGCCAAGCCCATGTGCCCAAAATGTACGAATGGCTCAATTTGGATAGTGAGGC
AGGCCAAGAATATTGGGCCGCAATGGAATTAGCCGGAGCCTTTGCCCAAGCCAATCATGAAGTGATCCACCGCTTATTTG
CCCAACGCACCAAACTCCAACCAATCACCACCATCCAAAATCACCATAATTTTGCTTGGCGCGAAGGCGATTTGATTGTG
CATCGCAAGGGTGCAACACCTGCGGGGGTTGGCGTGCGGGGAGTCATTCCAGGCAGTATGGCATCGGCCTCGTATGTGGT
TGAAGGTTTGGGCAACCCCGAAGCCTTGCATAGTGCCTCGCATGGAGCTGGCCGCTTGTTAAGCCGCTCCAAAGCGCGGG
CCACCATCAGCCCAAGTGAAGCCAAAAAAGTCATCAAAGCTCACGGCGTGCATGTCGAAGGCTGGAGCATCGATGAATCG
CCATTGGCCTACAAAGACATCGAACGAGTGATGGAATTGCAAATTGAGGCCGATTTGATCAAACCCCTCGCCCGTATGAA
ACCTATCGCCGTAATTATGGCAGGCGAAGCGGGCGAGAATTAA

Upstream 100 bases:

>100_bases
TCGGCCTGATGCTTGAGCATGCCGCTTTTCAGTATAGTGGTTGTAGATTGAATAATAGCCGGTAGCCTAACGCGCTGGCC
TAGAACTGAGCCTCACATTT

Downstream 100 bases:

>100_bases
AGTATAAGTCCCTCACCCCCTACCCCTCTCCCACTGCGGCGGGCGAGGGGAGCACCAATCTGGATAGTTACACTGCCAAC
CACGCGATTCTAATTTCATC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 440; Mature: 440

Protein sequence:

>440_residues
MKLNVLLKPWRGDKRFTAIAKYAAALKKSGSKDLQIVAQVEAEFGKPTELARINEQPQPYKAYGQIGVDIEAAALEQLLL
ALRLPIAAQGALMPDAHPGFALPIGGVFAAHNAVSPMMVGVDIGCRMHLTIFAEAPMEIQRQREQLFRDLADVTVFGSGA
SRKRGPDHPILGIKHWNITAQTRSLREKAIAQLGTSGGGNHFANIVVGERIGENDLPRQFVGLLTHSGSRGVGYAIAKHY
SNIAVQETARQAHVPKMYEWLNLDSEAGQEYWAAMELAGAFAQANHEVIHRLFAQRTKLQPITTIQNHHNFAWREGDLIV
HRKGATPAGVGVRGVIPGSMASASYVVEGLGNPEALHSASHGAGRLLSRSKARATISPSEAKKVIKAHGVHVEGWSIDES
PLAYKDIERVMELQIEADLIKPLARMKPIAVIMAGEAGEN

Sequences:

>Translated_440_residues
MKLNVLLKPWRGDKRFTAIAKYAAALKKSGSKDLQIVAQVEAEFGKPTELARINEQPQPYKAYGQIGVDIEAAALEQLLL
ALRLPIAAQGALMPDAHPGFALPIGGVFAAHNAVSPMMVGVDIGCRMHLTIFAEAPMEIQRQREQLFRDLADVTVFGSGA
SRKRGPDHPILGIKHWNITAQTRSLREKAIAQLGTSGGGNHFANIVVGERIGENDLPRQFVGLLTHSGSRGVGYAIAKHY
SNIAVQETARQAHVPKMYEWLNLDSEAGQEYWAAMELAGAFAQANHEVIHRLFAQRTKLQPITTIQNHHNFAWREGDLIV
HRKGATPAGVGVRGVIPGSMASASYVVEGLGNPEALHSASHGAGRLLSRSKARATISPSEAKKVIKAHGVHVEGWSIDES
PLAYKDIERVMELQIEADLIKPLARMKPIAVIMAGEAGEN
>Mature_440_residues
MKLNVLLKPWRGDKRFTAIAKYAAALKKSGSKDLQIVAQVEAEFGKPTELARINEQPQPYKAYGQIGVDIEAAALEQLLL
ALRLPIAAQGALMPDAHPGFALPIGGVFAAHNAVSPMMVGVDIGCRMHLTIFAEAPMEIQRQREQLFRDLADVTVFGSGA
SRKRGPDHPILGIKHWNITAQTRSLREKAIAQLGTSGGGNHFANIVVGERIGENDLPRQFVGLLTHSGSRGVGYAIAKHY
SNIAVQETARQAHVPKMYEWLNLDSEAGQEYWAAMELAGAFAQANHEVIHRLFAQRTKLQPITTIQNHHNFAWREGDLIV
HRKGATPAGVGVRGVIPGSMASASYVVEGLGNPEALHSASHGAGRLLSRSKARATISPSEAKKVIKAHGVHVEGWSIDES
PLAYKDIERVMELQIEADLIKPLARMKPIAVIMAGEAGEN

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Homo sapiens, GI7657015, Length=420, Percent_Identity=26.1904761904762, Blast_Score=102, Evalue=1e-21,
Organism=Escherichia coli, GI2367224, Length=406, Percent_Identity=30.5418719211823, Blast_Score=164, Evalue=1e-41,
Organism=Caenorhabditis elegans, GI17506665, Length=475, Percent_Identity=27.5789473684211, Blast_Score=110, Evalue=2e-24,
Organism=Drosophila melanogaster, GI24585217, Length=426, Percent_Identity=27.4647887323944, Blast_Score=99, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 47711; Mature: 47711

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLNVLLKPWRGDKRFTAIAKYAAALKKSGSKDLQIVAQVEAEFGKPTELARINEQPQPY
CCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHCCCCHHHHHCCCCCCCC
KAYGQIGVDIEAAALEQLLLALRLPIAAQGALMPDAHPGFALPIGGVFAAHNAVSPMMVG
HHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEE
VDIGCRMHLTIFAEAPMEIQRQREQLFRDLADVTVFGSGASRKRGPDHPILGIKHWNITA
EECCCEEEEEEEECCCHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCEEEEEEEEEEH
QTRSLREKAIAQLGTSGGGNHFANIVVGERIGENDLPRQFVGLLTHSGSRGVGYAIAKHY
HHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHH
SNIAVQETARQAHVPKMYEWLNLDSEAGQEYWAAMELAGAFAQANHEVIHRLFAQRTKLQ
HHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC
PITTIQNHHNFAWREGDLIVHRKGATPAGVGVRGVIPGSMASASYVVEGLGNPEALHSAS
CHHHHHCCCCEEEECCCEEEEECCCCCCCCCEEECCCCCHHHHHHHHHCCCCHHHHHHCC
HGAGRLLSRSKARATISPSEAKKVIKAHGVHVEGWSIDESPLAYKDIERVMELQIEADLI
CCHHHHHHHCCCCCEECHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
KPLARMKPIAVIMAGEAGEN
HHHHHCCCEEEEEECCCCCC
>Mature Secondary Structure
MKLNVLLKPWRGDKRFTAIAKYAAALKKSGSKDLQIVAQVEAEFGKPTELARINEQPQPY
CCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHCCCCHHHHHCCCCCCCC
KAYGQIGVDIEAAALEQLLLALRLPIAAQGALMPDAHPGFALPIGGVFAAHNAVSPMMVG
HHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEE
VDIGCRMHLTIFAEAPMEIQRQREQLFRDLADVTVFGSGASRKRGPDHPILGIKHWNITA
EECCCEEEEEEEECCCHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCEEEEEEEEEEH
QTRSLREKAIAQLGTSGGGNHFANIVVGERIGENDLPRQFVGLLTHSGSRGVGYAIAKHY
HHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHH
SNIAVQETARQAHVPKMYEWLNLDSEAGQEYWAAMELAGAFAQANHEVIHRLFAQRTKLQ
HHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC
PITTIQNHHNFAWREGDLIVHRKGATPAGVGVRGVIPGSMASASYVVEGLGNPEALHSAS
CHHHHHCCCCEEEECCCEEEEECCCCCCCCCEEECCCCCHHHHHHHHHCCCCHHHHHHCC
HGAGRLLSRSKARATISPSEAKKVIKAHGVHVEGWSIDESPLAYKDIERVMELQIEADLI
CCHHHHHHHCCCCCEECHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
KPLARMKPIAVIMAGEAGEN
HHHHHCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 9738023 [H]