Click here to switch to the map view.

The map label for this gene is ydcM [C]

Identifier: 159896734

GI number: 159896734

Start: 235861

End: 237018

Strand: Direct

Name: ydcM [C]

Synonym: Haur_0201

Alternate gene names: 159896734

Gene position: 235861-237018 (Clockwise)

Preceding gene: 159896729

Following gene: 159896741

Centisome position: 3.72

GC content: 53.45

Gene sequence:

>1158_bases
ATGCGAACGCTGACCCGTTGCTATAAATATCGTCTTCAACCCTCACCTACCCACGTCGAAACCTTGGTCCAGTGGGCGGG
TTGTCGGCGCTTCGTCTGGAACTGGGCGCTAGGTCAGAAAACAGACCATTATCGTGCAACAGGTCAACGGCTAAGTTACT
CGCAACTGGCGGCAGCGTTGGTTGATCTGAAACGTCAGCCCAAAACGGCTTTTTTGCGCGAGTGTCATTCGCAGCCCCTG
CAACAAGCGCTGATAGATTTAGAAACGGCCTTTACCAACTTTTTTGCCAAACGCGCCAAATACCCTCGTTTCAAAGCCCG
CAAAGTCACTCTGCACAGTCTCCGCTTCCCGCAAGGTGTGGCAGTAGTCAATGAACGCACCATTAGCGTACCAAAAATCG
GGCATATGCAGGCAATCATTCATCGACCGCTGCTGGGAATCGTGAAGGGTGCAACGATTAAACAAGATACCACAGGCGCA
TGGTGGGTGGTGTTTGTCTGTCATACTGAGCGCCCTGATGTGCTGCTCACGACTGATCGGCCTGTAGGCATTGATGTGGG
ACTTGAATCCTTCACCACGCTGTCAACAGGCGAGAAAACTGCACCACCCAAATTCTACCGCCGAAGCCAGAAGAAACTTG
CCCGTGCTCAACGCAAACTCTCTCGCGCACAAAAGGGCAGCAACAACCGCTTGAAAGCACGCAAGCGGGTTGCTCGTATT
CACAAGAAAATCAGCAACCAACGCGCCGATTGGCTCCATAAACAGGCGTTGGGGATGGTTCAACGATTCGATGTGGTGTG
CATCGAAGACCTGAATATTAAAGGCCTCGCGAGAACCAAGCTGGCCAAATCATTCAGTGATGCCGCCCTGAGTACCTTCA
TGCAACGATTGCAGGAAAAAGCCGAATGGCACGGGCGGCGGGTGATTAAGGTCGGGCGGTTCTATGCCTCATCAAAAACC
TGTCACCACTGCCATATCAAAACCGCGTTGACGTTGGCGGATCGTGTGTGGACATGTCACGCCTGTGGCACGACCCATGA
TCGTGATGGCAACGCCGCGATCAACATCGTGCACGAAGGGCTACGACTGCTTGCCGTTGGGACGGCGGAAAGCCAAAACG
CTGCTCGAGATGGTGTAAACCCAGCGAAACGCTGGTAG

Upstream 100 bases:

>100_bases
ATATTATGCAACTACTACGATAATAGTGTTTTTAATTCAAATATATTGATTATTGAACAACATAGTGGTATAGTGTCAAT
ACGTAAAAGGAAGTCTGCTC

Downstream 100 bases:

>100_bases
CCGTCGTTGAAGGCAGAAGCCACGCCCCTCGTGGGCGTGGTAGTTCACTGTATCTTTTTCACCACCCCTCCGCCCCGCCT
CAAGGCGGGGAACGCAGGGT

Product: IS605 family transposase OrfB

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 385; Mature: 385

Protein sequence:

>385_residues
MRTLTRCYKYRLQPSPTHVETLVQWAGCRRFVWNWALGQKTDHYRATGQRLSYSQLAAALVDLKRQPKTAFLRECHSQPL
QQALIDLETAFTNFFAKRAKYPRFKARKVTLHSLRFPQGVAVVNERTISVPKIGHMQAIIHRPLLGIVKGATIKQDTTGA
WWVVFVCHTERPDVLLTTDRPVGIDVGLESFTTLSTGEKTAPPKFYRRSQKKLARAQRKLSRAQKGSNNRLKARKRVARI
HKKISNQRADWLHKQALGMVQRFDVVCIEDLNIKGLARTKLAKSFSDAALSTFMQRLQEKAEWHGRRVIKVGRFYASSKT
CHHCHIKTALTLADRVWTCHACGTTHDRDGNAAINIVHEGLRLLAVGTAESQNAARDGVNPAKRW

Sequences:

>Translated_385_residues
MRTLTRCYKYRLQPSPTHVETLVQWAGCRRFVWNWALGQKTDHYRATGQRLSYSQLAAALVDLKRQPKTAFLRECHSQPL
QQALIDLETAFTNFFAKRAKYPRFKARKVTLHSLRFPQGVAVVNERTISVPKIGHMQAIIHRPLLGIVKGATIKQDTTGA
WWVVFVCHTERPDVLLTTDRPVGIDVGLESFTTLSTGEKTAPPKFYRRSQKKLARAQRKLSRAQKGSNNRLKARKRVARI
HKKISNQRADWLHKQALGMVQRFDVVCIEDLNIKGLARTKLAKSFSDAALSTFMQRLQEKAEWHGRRVIKVGRFYASSKT
CHHCHIKTALTLADRVWTCHACGTTHDRDGNAAINIVHEGLRLLAVGTAESQNAARDGVNPAKRW
>Mature_385_residues
MRTLTRCYKYRLQPSPTHVETLVQWAGCRRFVWNWALGQKTDHYRATGQRLSYSQLAAALVDLKRQPKTAFLRECHSQPL
QQALIDLETAFTNFFAKRAKYPRFKARKVTLHSLRFPQGVAVVNERTISVPKIGHMQAIIHRPLLGIVKGATIKQDTTGA
WWVVFVCHTERPDVLLTTDRPVGIDVGLESFTTLSTGEKTAPPKFYRRSQKKLARAQRKLSRAQKGSNNRLKARKRVARI
HKKISNQRADWLHKQALGMVQRFDVVCIEDLNIKGLARTKLAKSFSDAALSTFMQRLQEKAEWHGRRVIKVGRFYASSKT
CHHCHIKTALTLADRVWTCHACGTTHDRDGNAAINIVHEGLRLLAVGTAESQNAARDGVNPAKRW

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=360, Percent_Identity=34.1666666666667, Blast_Score=202, Evalue=2e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 43799; Mature: 43799

Theoretical pI: Translated: 11.27; Mature: 11.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTLTRCYKYRLQPSPTHVETLVQWAGCRRFVWNWALGQKTDHYRATGQRLSYSQLAAAL
CCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCHHHHHHHH
VDLKRQPKTAFLRECHSQPLQQALIDLETAFTNFFAKRAKYPRFKARKVTLHSLRFPQGV
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCE
AVVNERTISVPKIGHMQAIIHRPLLGIVKGATIKQDTTGAWWVVFVCHTERPDVLLTTDR
EEECCCEECCCCCHHHHHHHHHHHHHHHCCCEECCCCCCCEEEEEEEECCCCCEEEECCC
PVGIDVGLESFTTLSTGEKTAPPKFYRRSQKKLARAQRKLSRAQKGSNNRLKARKRVARI
CCEEECCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
HKKISNQRADWLHKQALGMVQRFDVVCIEDLNIKGLARTKLAKSFSDAALSTFMQRLQEK
HHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AEWHGRRVIKVGRFYASSKTCHHCHIKTALTLADRVWTCHACGTTHDRDGNAAINIVHEG
HHHCCCEEEEEHHHHHCCCCCEEEEHHHHHHHHHHHEEEEECCCCCCCCCCHHHHHHHHC
LRLLAVGTAESQNAARDGVNPAKRW
EEEEEEECCCCCCHHHCCCCHHCCC
>Mature Secondary Structure
MRTLTRCYKYRLQPSPTHVETLVQWAGCRRFVWNWALGQKTDHYRATGQRLSYSQLAAAL
CCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCHHHHHHHH
VDLKRQPKTAFLRECHSQPLQQALIDLETAFTNFFAKRAKYPRFKARKVTLHSLRFPQGV
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCE
AVVNERTISVPKIGHMQAIIHRPLLGIVKGATIKQDTTGAWWVVFVCHTERPDVLLTTDR
EEECCCEECCCCCHHHHHHHHHHHHHHHCCCEECCCCCCCEEEEEEEECCCCCEEEECCC
PVGIDVGLESFTTLSTGEKTAPPKFYRRSQKKLARAQRKLSRAQKGSNNRLKARKRVARI
CCEEECCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
HKKISNQRADWLHKQALGMVQRFDVVCIEDLNIKGLARTKLAKSFSDAALSTFMQRLQEK
HHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AEWHGRRVIKVGRFYASSKTCHHCHIKTALTLADRVWTCHACGTTHDRDGNAAINIVHEG
HHHCCCEEEEEHHHHHCCCCCEEEEHHHHHHHHHHHEEEEECCCCCCCCCCHHHHHHHHC
LRLLAVGTAESQNAARDGVNPAKRW
EEEEEEECCCCCCHHHCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]