| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159896542
Identifier: 159896542
GI number: 159896542
Start: 10540
End: 11025
Strand: Reverse
Name: 159896542
Synonym: Haur_0009
Alternate gene names: NA
Gene position: 11025-10540 (Counterclockwise)
Preceding gene: 159896543
Following gene: 159896541
Centisome position: 0.17
GC content: 54.12
Gene sequence:
>486_bases ATGACCACACTTTTGGAGCAAACCCAACAACTTTTGGCCCGCATGGACGAGCGCGAACAGCAATTGGCCCTGACGTTAAT CAAGCGCATCGGCAAGCACCAAGCCCATGGAGCCGGCTTTACTTGGAGTTTAGGCGTGGTGTATGAGGATGTTCAGCCTG GCTTCTCGCGTTGCTCATTGCAGATCGACCCAGGCCATTACAATCCGGCTGGTATCGCTCACGGCGGCGTAGCCTATAGC CTACTAGATACCGCCATGGGTGGCGCATTTTGGACTGCGCTCGAACGCCCGTTGGGTTGCGCCACGCTCGAATTGAAAAT TAACTACTTGCGGCCAATCGTTGCTGGCACAATCATCGCTACCGCCGAATTGGTCGAACGCACCACGCGGTTTGGCATTT TGACCGGGCGGGTGGTCAACGAAGCTGGCGAATTATTGGCTTTAGGTCAAGGCACATTTGCGATTATCAATTATCCCAAG GAGTGA
Upstream 100 bases:
>100_bases ATTTGGCGGCCTAACGCATTATTCTGTGCTACATTAATCAACAAATGTCCTTCAATCATAAGCCTATGGATTTGCCATAG GCTTTTTTTAAGGTGTTGCC
Downstream 100 bases:
>100_bases GCAATGCAGATCATTCTGGCCGATGTTCAACCAGCCATGGTCGCCGCATGGCAGCACATTTGTGGCGATTTGCCGAATGT CAGCATTCAGCATGGCTCAA
Product: thioesterase superfamily protein
Products: NA
Alternate protein names: Phenylacetic Acid Degradation-Related Protein; Aromatic Compounds Degradation Protein PaaI; Phenylacetic Acid Degradation-Like Protein; Thioesterase Family Protein
Number of amino acids: Translated: 161; Mature: 160
Protein sequence:
>161_residues MTTLLEQTQQLLARMDEREQQLALTLIKRIGKHQAHGAGFTWSLGVVYEDVQPGFSRCSLQIDPGHYNPAGIAHGGVAYS LLDTAMGGAFWTALERPLGCATLELKINYLRPIVAGTIIATAELVERTTRFGILTGRVVNEAGELLALGQGTFAIINYPK E
Sequences:
>Translated_161_residues MTTLLEQTQQLLARMDEREQQLALTLIKRIGKHQAHGAGFTWSLGVVYEDVQPGFSRCSLQIDPGHYNPAGIAHGGVAYS LLDTAMGGAFWTALERPLGCATLELKINYLRPIVAGTIIATAELVERTTRFGILTGRVVNEAGELLALGQGTFAIINYPK E >Mature_160_residues TTLLEQTQQLLARMDEREQQLALTLIKRIGKHQAHGAGFTWSLGVVYEDVQPGFSRCSLQIDPGHYNPAGIAHGGVAYSL LDTAMGGAFWTALERPLGCATLELKINYLRPIVAGTIIATAELVERTTRFGILTGRVVNEAGELLALGQGTFAIINYPKE
Specific function: Unknown
COG id: COG2050
COG function: function code Q; Uncharacterized protein, possibly involved in aromatic compounds catabolism
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17495; Mature: 17364
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTLLEQTQQLLARMDEREQQLALTLIKRIGKHQAHGAGFTWSLGVVYEDVQPGFSRCSL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECEEEECCCCCCHHEEE QIDPGHYNPAGIAHGGVAYSLLDTAMGGAFWTALERPLGCATLELKINYLRPIVAGTIIA EECCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHH TAELVERTTRFGILTGRVVNEAGELLALGQGTFAIINYPKE HHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEECCCC >Mature Secondary Structure TTLLEQTQQLLARMDEREQQLALTLIKRIGKHQAHGAGFTWSLGVVYEDVQPGFSRCSL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECEEEECCCCCCHHEEE QIDPGHYNPAGIAHGGVAYSLLDTAMGGAFWTALERPLGCATLELKINYLRPIVAGTIIA EECCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHH TAELVERTTRFGILTGRVVNEAGELLALGQGTFAIINYPKE HHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA