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The map label for this gene is ureD

Identifier: 15927874

GI number: 15927874

Start: 2347264

End: 2347908

Strand: Direct

Name: ureD

Synonym: SA2088

Alternate gene names: 15927874

Gene position: 2347264-2347908 (Clockwise)

Preceding gene: 15927873

Following gene: 15927879

Centisome position: 83.39

GC content: 29.61

Gene sequence:

>645_bases
ATGAATGTGAATGTCGAAGATAACGCTAAAGTGACATTGACATCTCAAGGTGCAACAAAAATATACAAGACACCTTCCAA
TCATGTTGAGCAGTATCAAACTTTTAATTTAAAAGATAACGCATATTTAGAATATGTCGCTGATCCAATCATCGCATATG
AAAATGCTAAATTTTATCAACACAATACGTTCAATCTCAATAATTCTAGTTCATTATTTTATACTGATATTTTAACTCCT
GGTTATTCAAAAACTGGCGAAGCCTTCAAGTATCAATATATGCATTTAATAAATGAAATTTATATTGAAGATGAGTTAGT
CACATATGATAATTTATTATTGAATCCTAATAAACAATCGATCAATGAAATAGGTTATATGGAACATTACTCTCATTATG
GCTCTGCTTACTTCATACATGAAGATGTTAACCAAAAACTAATCGATTCAGTTTATGAAACCATTAGTTCTTATAGCAAT
ACATTCGATTGTCGTGTTGCTATTTCTCAATTGCCTACACATGGCTTTGCAGTTAGAATTTTTGCTTATCGCACACAAAT
TATAGAGAAAATACTTGGAACCATCCAAAGCTATATCGCAGAAAATATTTATGATCGTAAACTTGATTTTCTAAGAAAAT
ATTAA

Upstream 100 bases:

>100_bases
ACTTAAAGTGATACGTCCAGTTTATCTAAATCAATCTACCATTCCTACATTTTATATAGTAAATGTAGGTGGTGGCTATT
TAGATGGAGATCGTTACCGT

Downstream 100 bases:

>100_bases
AATAAAAAGACTAGTGTACCTTGTTTCAAGCTTAATAAGCTGAAATAAGGTATGGCTAGTCTTTAACTTTAATTAAAGCA
TCTTCAATATTTAAATTTTA

Product: urease accessory protein UreD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 214; Mature: 214

Protein sequence:

>214_residues
MNVNVEDNAKVTLTSQGATKIYKTPSNHVEQYQTFNLKDNAYLEYVADPIIAYENAKFYQHNTFNLNNSSSLFYTDILTP
GYSKTGEAFKYQYMHLINEIYIEDELVTYDNLLLNPNKQSINEIGYMEHYSHYGSAYFIHEDVNQKLIDSVYETISSYSN
TFDCRVAISQLPTHGFAVRIFAYRTQIIEKILGTIQSYIAENIYDRKLDFLRKY

Sequences:

>Translated_214_residues
MNVNVEDNAKVTLTSQGATKIYKTPSNHVEQYQTFNLKDNAYLEYVADPIIAYENAKFYQHNTFNLNNSSSLFYTDILTP
GYSKTGEAFKYQYMHLINEIYIEDELVTYDNLLLNPNKQSINEIGYMEHYSHYGSAYFIHEDVNQKLIDSVYETISSYSN
TFDCRVAISQLPTHGFAVRIFAYRTQIIEKILGTIQSYIAENIYDRKLDFLRKY
>Mature_214_residues
MNVNVEDNAKVTLTSQGATKIYKTPSNHVEQYQTFNLKDNAYLEYVADPIIAYENAKFYQHNTFNLNNSSSLFYTDILTP
GYSKTGEAFKYQYMHLINEIYIEDELVTYDNLLLNPNKQSINEIGYMEHYSHYGSAYFIHEDVNQKLIDSVYETISSYSN
TFDCRVAISQLPTHGFAVRIFAYRTQIIEKILGTIQSYIAENIYDRKLDFLRKY

Specific function: Required for maturation of urease via the functional incorporation of the urease nickel metallocenter

COG id: COG0829

COG function: function code O; Urease accessory protein UreH

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ureD family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): URED_STAA2 (A6U418)

Other databases:

- EMBL:   CP000736
- RefSeq:   YP_001317473.1
- STRING:   A6U418
- EnsemblBacteria:   EBSTAT00000015863
- GeneID:   5315376
- GenomeReviews:   CP000736_GR
- KEGG:   sah:SaurJH1_2361
- eggNOG:   COG0829
- GeneTree:   EBGT00050000024738
- HOGENOM:   HBG693939
- OMA:   SELIYGE
- ProtClustDB:   CLSK885870
- BioCyc:   SAUR359787:SAURJH1_2361-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01384
- InterPro:   IPR002669

Pfam domain/function: PF01774 UreD

EC number: NA

Molecular weight: Translated: 25004; Mature: 25004

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVNVEDNAKVTLTSQGATKIYKTPSNHVEQYQTFNLKDNAYLEYVADPIIAYENAKFYQ
CCCCCCCCCEEEEECCCCEEEEECCHHHHHHHHCCCCCCCCHHHHHHCCCEEECCCEEEE
HNTFNLNNSSSLFYTDILTPGYSKTGEAFKYQYMHLINEIYIEDELVTYDNLLLNPNKQS
CCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCEEECCCHHH
INEIGYMEHYSHYGSAYFIHEDVNQKLIDSVYETISSYSNTFDCRVAISQLPTHGFAVRI
HHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHCCCCEEEEEEHHHCCCCCCEEHH
FAYRTQIIEKILGTIQSYIAENIYDRKLDFLRKY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNVNVEDNAKVTLTSQGATKIYKTPSNHVEQYQTFNLKDNAYLEYVADPIIAYENAKFYQ
CCCCCCCCCEEEEECCCCEEEEECCHHHHHHHHCCCCCCCCHHHHHHCCCEEECCCEEEE
HNTFNLNNSSSLFYTDILTPGYSKTGEAFKYQYMHLINEIYIEDELVTYDNLLLNPNKQS
CCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCEEECCCHHH
INEIGYMEHYSHYGSAYFIHEDVNQKLIDSVYETISSYSNTFDCRVAISQLPTHGFAVRI
HHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHCCCCEEEEEEHHHCCCCCCEEHH
FAYRTQIIEKILGTIQSYIAENIYDRKLDFLRKY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA