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The map label for this gene is sigS

Identifier: 15927351

GI number: 15927351

Start: 1834070

End: 1834540

Strand: Direct

Name: sigS

Synonym: SA1595

Alternate gene names: 15927351

Gene position: 1834070-1834540 (Clockwise)

Preceding gene: 15927348

Following gene: 15927352

Centisome position: 65.16

GC content: 28.03

Gene sequence:

>471_bases
TTGAAATTTAATGACGTATACAACAAACACCACAAAATCATACACCATCTTTTAAAAAAATATAATATTAGCTATAATTA
TGATGAGTATTATCAACTACTCTTGATAAAAATGTGGCAATTGAGTCAGATATATAAACCCTCAAGCAAGCAATCTTTAT
CCTCTTTTTTATTCACTCGATTAAATTATTACCTTATCGATTTATTCAGACAACAAAATCAATTAAAAGATGTCATTTTA
TGTGAGAATAATTCACCAACATTAACTGAACAACCAACATACTTTAATGAACATGACCTTCGTTTACAAGATATCTTCAA
GCTTTTAAATCATAGAGAAAGACTATGGCTCAAACTATACCTTGAAGGATACAAGCAATTTGAAATTGCTGAAATCATGT
CATTATCGCTTTCAACGATTAAATTAATTAAGATGTCCGTTAAGCGTAAATGCCAACATAATTTTAATTAG

Upstream 100 bases:

>100_bases
ACTTAATTTAGCGATTACGCAAATGAATGATTTTTCTAAATATTTTATTCTAACTTTATCCGGAAATATTTGTTATACGT
ATAACTTGGAGAATGACTAC

Downstream 100 bases:

>100_bases
TTTATTGTGAAATTTCGGTCGATGTGTTAGTGATGTTGAAACACCCTAACATCTTCATATAAATTTATTTTAACCATTAA
ATTAACAACTTATTATACGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 156

Protein sequence:

>156_residues
MKFNDVYNKHHKIIHHLLKKYNISYNYDEYYQLLLIKMWQLSQIYKPSSKQSLSSFLFTRLNYYLIDLFRQQNQLKDVIL
CENNSPTLTEQPTYFNEHDLRLQDIFKLLNHRERLWLKLYLEGYKQFEIAEIMSLSLSTIKLIKMSVKRKCQHNFN

Sequences:

>Translated_156_residues
MKFNDVYNKHHKIIHHLLKKYNISYNYDEYYQLLLIKMWQLSQIYKPSSKQSLSSFLFTRLNYYLIDLFRQQNQLKDVIL
CENNSPTLTEQPTYFNEHDLRLQDIFKLLNHRERLWLKLYLEGYKQFEIAEIMSLSLSTIKLIKMSVKRKCQHNFN
>Mature_156_residues
MKFNDVYNKHHKIIHHLLKKYNISYNYDEYYQLLLIKMWQLSQIYKPSSKQSLSSFLFTRLNYYLIDLFRQQNQLKDVIL
CENNSPTLTEQPTYFNEHDLRLQDIFKLLNHRERLWLKLYLEGYKQFEIAEIMSLSLSTIKLIKMSVKRKCQHNFN

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. Sigma-S contributes to the protection against external stress, thus playing a role in cellular fitness and survival

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SIGS_STAA1 (A7X3L7)

Other databases:

- EMBL:   AP009324
- RefSeq:   YP_001442352.1
- ProteinModelPortal:   A7X3L7
- STRING:   A7X3L7
- EnsemblBacteria:   EBSTAT00000005388
- GeneID:   5561143
- GenomeReviews:   AP009324_GR
- KEGG:   saw:SAHV_1762
- eggNOG:   COG1595
- GeneTree:   EBGT00050000024831
- HOGENOM:   HBG692943
- OMA:   NYDEFYQ
- ProtClustDB:   CLSK885550
- BioCyc:   SAUR418127:SAHV_1762-MONOMER
- GO:   GO:0005622
- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR016032
- InterPro:   IPR000792
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- TIGRFAMs:   TIGR02937

Pfam domain/function: PF00196 GerE; PF04542 Sigma70_r2; SSF46894 Bipartite_resp_reg_C-effector

EC number: NA

Molecular weight: Translated: 19162; Mature: 19162

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFNDVYNKHHKIIHHLLKKYNISYNYDEYYQLLLIKMWQLSQIYKPSSKQSLSSFLFTR
CCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
LNYYLIDLFRQQNQLKDVILCENNSPTLTEQPTYFNEHDLRLQDIFKLLNHRERLWLKLY
HHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
LEGYKQFEIAEIMSLSLSTIKLIKMSVKRKCQHNFN
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKFNDVYNKHHKIIHHLLKKYNISYNYDEYYQLLLIKMWQLSQIYKPSSKQSLSSFLFTR
CCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
LNYYLIDLFRQQNQLKDVILCENNSPTLTEQPTYFNEHDLRLQDIFKLLNHRERLWLKLY
HHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
LEGYKQFEIAEIMSLSLSTIKLIKMSVKRKCQHNFN
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA