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The map label for this gene is yrvN [H]

Identifier: 15927207

GI number: 15927207

Start: 1658127

End: 1659401

Strand: Direct

Name: yrvN [H]

Synonym: SA1454

Alternate gene names: 15927207

Gene position: 1658127-1659401 (Clockwise)

Preceding gene: 15927203

Following gene: 15927231

Centisome position: 58.91

GC content: 36.08

Gene sequence:

>1275_bases
GTGAGTACAGAACCATTAGCATCGAGAATGCGCCCAAAAAATATAGATGAAATCATTTCCCAACAACATTTAGTTGGACC
AAAAGGCATTATCAGAAGAATGGTTGACACAAAAAAATTAACTTCAATGATTTTTTATGGTCCACCTGGTATAGGCAAAA
CAAGTATTGCCAAAGCAATTTCGGGCAGTACGCAATATAAATTCAGACAATTGAATGCTGTAACTAACACTAAAAAAGAT
ATGCAACTTGTTGTTGAAGAAGCTAAAATGTCTGGTCAAGTTATCTTGTTGTTAGATGAAATACATCGACTAGATAAAGC
TAAACAAGACTTTTTATTACCTCATTTAGAAAATGGCAAAATCGTCTTGATTGGTGCTACAACTTCAAATCCTTATCATG
CTATCAATCCAGCGATTCGTTCAAGAGCGCAAATTTTCGAGTTATATCCTTTAAATGACGAAGATGTGCGCCAAGCGTTA
ACTCGTGCAATAGAAGATGATGAGAATGGTTTGAAAACATATCAACCCAAAATTGATGAAGATGCCATGACCTACTTTTC
TACACAAAGCCAAGGTGATGTTCGTAGTGCGTTAAATGCATTGGAATTAGCTGTATTAAGCGCAGATAATGACAAAGACG
GTTATCGACATGTTACATTGCAAGATGCTAAAGACTGTTTACAAAAAGGTGCATTTGTAAGTGATAAGGATGGTGACATG
CATTACGATGTTATGAGCGCTTTCCAAAAATCTATCCGTGGTAGCGACGTCAATGCCGCTTTACATTATTTAGCACGATT
AATTGAAGCTGGAGATTTACCTACAATAGTTCGACGATTACTTGTAATTAGCTATGAGGATATAGGCTTAGCCTCACCTA
ATGCTGGTCAGAGAACACTTGCTGCTATTGAATCAGCAGAACGTCTAGGTTTACCAGAAGCTAGAATTCCACTAAGCCAA
GCAGTAATCGAACTATGCTTATCACCTAAGTCAAATTCAGCAATGAGTGCCATTGATAGTGCATTGTCCGATATTAGAAA
CGGTCATGTGGGTCAAATTCCAAATCATTTAAAAGATGGACATTATCAAGGTGCTAAAGATCTAGGCCGATCTATTGGTT
ACAAATATCCACACCAATATGTTAATGGCTATGTTTCACAGCAATATTTACCTGATAAACTTAAAAACAAAATTTATTAT
GAACCAAAAACGACATCTAAAAGTGAACAACAACTCAAAGAAATATATAACAACTTACTTAAACAAAGGCCGTAA

Upstream 100 bases:

>100_bases
TAGTAGAAATTTTCATTGTATAACCTCACTTAATTCGAATATTGATATTCCCATTTTAGCATTTTTTGAGTTAAGATAGT
ATAAGAAAGGTGTGACAAAT

Downstream 100 bases:

>100_bases
AAATAAGATTAAATCGATTACCTTTGATATTTTAGCTATAATCAAATCAAAACTGACTAGTACACGAGGCATATTCTACT
ATGCTTGCGAACTAGTCAGT

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 424; Mature: 423

Protein sequence:

>424_residues
MSTEPLASRMRPKNIDEIISQQHLVGPKGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKD
MQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQAL
TRAIEDDENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQ
AVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYY
EPKTTSKSEQQLKEIYNNLLKQRP

Sequences:

>Translated_424_residues
MSTEPLASRMRPKNIDEIISQQHLVGPKGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKD
MQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQAL
TRAIEDDENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQ
AVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYY
EPKTTSKSEQQLKEIYNNLLKQRP
>Mature_423_residues
STEPLASRMRPKNIDEIISQQHLVGPKGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKDM
QLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQALT
RAIEDDENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDMH
YDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQA
VIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYYE
PKTTSKSEQQLKEIYNNLLKQRP

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AAA ATPase family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=441, Percent_Identity=33.7868480725624, Blast_Score=246, Evalue=3e-65,
Organism=Homo sapiens, GI18426904, Length=441, Percent_Identity=30.3854875283447, Blast_Score=202, Evalue=6e-52,
Organism=Homo sapiens, GI4506491, Length=220, Percent_Identity=26.8181818181818, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI31881687, Length=220, Percent_Identity=26.8181818181818, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI6677723, Length=310, Percent_Identity=23.8709677419355, Blast_Score=69, Evalue=8e-12,
Organism=Homo sapiens, GI194306571, Length=309, Percent_Identity=23.9482200647249, Blast_Score=67, Evalue=4e-11,
Organism=Homo sapiens, GI194306567, Length=309, Percent_Identity=23.9482200647249, Blast_Score=67, Evalue=4e-11,
Organism=Escherichia coli, GI1787119, Length=405, Percent_Identity=36.5432098765432, Blast_Score=267, Evalue=7e-73,
Organism=Saccharomyces cerevisiae, GI6324111, Length=431, Percent_Identity=33.6426914153132, Blast_Score=235, Evalue=8e-63,
Organism=Saccharomyces cerevisiae, GI6324039, Length=223, Percent_Identity=27.8026905829596, Blast_Score=74, Evalue=5e-14,
Organism=Saccharomyces cerevisiae, GI6322528, Length=294, Percent_Identity=22.7891156462585, Blast_Score=65, Evalue=2e-11,
Organism=Drosophila melanogaster, GI19921076, Length=234, Percent_Identity=26.0683760683761, Blast_Score=70, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR008824
- InterPro:   IPR021886 [H]

Pfam domain/function: PF12002 MgsA_C; PF05496 RuvB_N [H]

EC number: NA

Molecular weight: Translated: 47223; Mature: 47092

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTEPLASRMRPKNIDEIISQQHLVGPKGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAI
CCCCCHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHH
SGSTQYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGK
CCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHCCCCCCCCC
IVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQALTRAIEDDENGLKTYQPKIDE
EEEEECCCCCCCHHCCHHHHHHHHEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCH
DAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
HHHHHHCCCCCCHHHHHHHHHHHHHEECCCCCCCCEEEEHHHHHHHHHCCCCCCCCCCCC
HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTL
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHCCCCCCCCCHHHH
AAIESAERLGLPEARIPLSQAVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDG
HHHHHHHHCCCCHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCC
HYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYYEPKTTSKSEQQLKEIYNNLL
CCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHCCCEEECCCCCCHHHHHHHHHHHHHH
KQRP
HCCC
>Mature Secondary Structure 
STEPLASRMRPKNIDEIISQQHLVGPKGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAI
CCCCHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHH
SGSTQYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGK
CCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHCCCCCCCCC
IVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQALTRAIEDDENGLKTYQPKIDE
EEEEECCCCCCCHHCCHHHHHHHHEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCH
DAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
HHHHHHCCCCCCHHHHHHHHHHHHHEECCCCCCCCEEEEHHHHHHHHHCCCCCCCCCCCC
HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTL
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHCCCCCCCCCHHHH
AAIESAERLGLPEARIPLSQAVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDG
HHHHHHHHCCCCHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCC
HYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYYEPKTTSKSEQQLKEIYNNLL
CCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHCCCEEECCCCCCHHHHHHHHHHHHHH
KQRP
HCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]