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The map label for this gene is ccpN [H]

Identifier: 15927144

GI number: 15927144

Start: 1599418

End: 1600041

Strand: Reverse

Name: ccpN [H]

Synonym: SA1393

Alternate gene names: 15927144

Gene position: 1600041-1599418 (Counterclockwise)

Preceding gene: 15927146

Following gene: 15927143

Centisome position: 56.84

GC content: 30.93

Gene sequence:

>624_bases
ATAGAACTCAGTCAAAGACAAGAACGAATCATCGAAATTGTTAAAACTAAAGGACCCATTACTGGTGAACAAATAGCAGA
TAAGTTGAATTTAACAAGAGCAACGCTTAGACCAGATTTAGCGATATTAACAATGTCAGGTTTTTTAGAAGCGCGTCCCC
GAGTTGGATATTATTATTCAGGTAAATCAAAAGGCAAATTTTTTAATGAAAAACTTCGACAATTTGAGGTTAAGGACTAT
ATGTCTCAACCTGTTGTGCTAAGAGAGAATACAACAGTTTATGACGCTATTTGTACAATTTTTTTAGAAGATGTAAGTAC
ATTATTTATTATTAATGAAGATAACGATTTTGTTGGTGTGTGTTCAAGAAAAGATTTATTAAGAGCTTCAATGATTGGAG
CAGATATTCATACAGTACCTATCAGTGTAAATATGACACGTATGCCTAATGTCACTTATTTAGAGGAAAGCGAATTAGTC
ATATACGCAGCAGATAGAATGATTGAAAAAGAAATTGATTCGATTCCAATTGTAAGAAAAAAAGATAATCAAAAGTATGA
AGTAATTGGAAGAATTTCCAAAACAACAATAGCTAAGTTATTAGTAGCATTATATAAAGAATAG

Upstream 100 bases:

>100_bases
CTAATTGATAGATTATTTAAAGGCAAGTAAAATTAATGTGTTTGTGACATGAAAGAAATATCGGTATAATAATAAGTGAA
TAAAAAAGGGGTGAAGACCT

Downstream 100 bases:

>100_bases
GTGAGAAGTAATGGAAAAAATTAAAATTATCGTAGCCTCAGATTCTATAGGTGAAACGGCAGAGTTAGTTGCTAGGGCAG
GTATTTCACAATTTAATCCT

Product: hypothetical protein

Products: NA

Alternate protein names: Catabolite control protein N; Control catabolite protein of gluconeogenesis [H]

Number of amino acids: Translated: 207; Mature: 207

Protein sequence:

>207_residues
MELSQRQERIIEIVKTKGPITGEQIADKLNLTRATLRPDLAILTMSGFLEARPRVGYYYSGKSKGKFFNEKLRQFEVKDY
MSQPVVLRENTTVYDAICTIFLEDVSTLFIINEDNDFVGVCSRKDLLRASMIGADIHTVPISVNMTRMPNVTYLEESELV
IYAADRMIEKEIDSIPIVRKKDNQKYEVIGRISKTTIAKLLVALYKE

Sequences:

>Translated_207_residues
MELSQRQERIIEIVKTKGPITGEQIADKLNLTRATLRPDLAILTMSGFLEARPRVGYYYSGKSKGKFFNEKLRQFEVKDY
MSQPVVLRENTTVYDAICTIFLEDVSTLFIINEDNDFVGVCSRKDLLRASMIGADIHTVPISVNMTRMPNVTYLEESELV
IYAADRMIEKEIDSIPIVRKKDNQKYEVIGRISKTTIAKLLVALYKE
>Mature_207_residues
MELSQRQERIIEIVKTKGPITGEQIADKLNLTRATLRPDLAILTMSGFLEARPRVGYYYSGKSKGKFFNEKLRQFEVKDY
MSQPVVLRENTTVYDAICTIFLEDVSTLFIINEDNDFVGVCSRKDLLRASMIGADIHTVPISVNMTRMPNVTYLEESELV
IYAADRMIEKEIDSIPIVRKKDNQKYEVIGRISKTTIAKLLVALYKE

Specific function: Transcription repressor that binds to the promoter of gapB and pckA genes, preventing their expression. Acts as a regulator for catabolite repression of gluconeogenic genes [H]

COG id: COG0517

COG function: function code R; FOG: CBS domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000644
- InterPro:   IPR013196
- InterPro:   IPR001034
- InterPro:   IPR016842
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00571 CBS; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 23709; Mature: 23709

Theoretical pI: Translated: 8.15; Mature: 8.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELSQRQERIIEIVKTKGPITGEQIADKLNLTRATLRPDLAILTMSGFLEARPRVGYYYS
CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHCCCCCCCEEEC
GKSKGKFFNEKLRQFEVKDYMSQPVVLRENTTVYDAICTIFLEDVSTLFIINEDNDFVGV
CCCCCHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHCCEEEEEEECCCCEEEE
CSRKDLLRASMIGADIHTVPISVNMTRMPNVTYLEESELVIYAADRMIEKEIDSIPIVRK
CCHHHHHHHHHHCCCEEEEEEEEEEEECCCEEEEECCCEEEEEHHHHHHHHHHCCCCEEC
KDNQKYEVIGRISKTTIAKLLVALYKE
CCCCEEEEEHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MELSQRQERIIEIVKTKGPITGEQIADKLNLTRATLRPDLAILTMSGFLEARPRVGYYYS
CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHCCCCCCCEEEC
GKSKGKFFNEKLRQFEVKDYMSQPVVLRENTTVYDAICTIFLEDVSTLFIINEDNDFVGV
CCCCCHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHCCEEEEEEECCCCEEEE
CSRKDLLRASMIGADIHTVPISVNMTRMPNVTYLEESELVIYAADRMIEKEIDSIPIVRK
CCHHHHHHHHHHCCCEEEEEEEEEEEECCCEEEEECCCEEEEEHHHHHHHHHHCCCCEEC
KDNQKYEVIGRISKTTIAKLLVALYKE
CCCCEEEEEHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]