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The map label for this gene is ydeE [H]

Identifier: 15927087

GI number: 15927087

Start: 1544365

End: 1545231

Strand: Direct

Name: ydeE [H]

Synonym: SA1337

Alternate gene names: 15927087

Gene position: 1544365-1545231 (Clockwise)

Preceding gene: 15927086

Following gene: 15927111

Centisome position: 54.87

GC content: 33.79

Gene sequence:

>867_bases
TTGGACGTTATCAAGCAAATACAACAGGCAATTGTTTATATTGAAGATCGTTTATTAGAGCCTTTCAATTTGCAAGAATT
AAGTGATTACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGATTGTCGGCTTATCTCCAGAAGCTTATG
CACGCGCGCGTAAAATGACACTCGCTGCAAATGATGTGATTAATGGTGCTACACGACTTGTAGATATCGCTAAAAAATAT
CACTATGCAAATTCAAATGATTTTGCAAATGATTTTAGTGATTTTCACGGCGTATCACCTATTCAAGCTTCTACTAAAAA
AGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGAGAGCACCCTATCCATACAGATTAGAAG
AGACAGATGATATTTCATTGGTTGGATATGCACGATTTATAGACACTAAGTATTTGTCACATCCTTTTAATGTTCCGGAT
TTTTTAGAAGACTTGCTCATTGATGGTAAAATTAAAGAGTTACGACGATATAATGACGTTAGTCCATTTGAACTATTTGT
TATTAGTTGTCCTCTTGAAAATGGTTTAGAAATATTTGTAGGTGTACCAAGTGAACGTTATCCTGCACACTTAGAAAGCC
GATTTTTACCTGGCAAACATTGTGCGAAATTCAATTTACAAGGTGAAATTGATTATGCAACTAATGAAGCTTGGTACTAT
ATTGAATCAAGTTTGCAGTTAACATTGCCATATGAACGAAATGATTTATATGTTGAAGTGTACCCTCTCGATATTTCATT
TAATGACCCATTCACTAAAATTCAGCTTTGGATTCCTGTTAAACAGAGTCCTTATGACGAAGATTAA

Upstream 100 bases:

>100_bases
TGCCCAAAACTATTTTAATAATCATTGAACAAATGGGTGTATAATTTATAGAAATAATGTAGAATAAAAATAAATGATTG
AATTAATTGGAGTGAAAGTT

Downstream 100 bases:

>100_bases
AAATTAAAAACAAAGAAGCCCCCTAATATATCTATAGGTCTACAAATGGCCTTAGATTCTATTAGGGGGCATATTAATAT
GTTAATTTAGTTCGATAACA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 288

Protein sequence:

>288_residues
MDVIKQIQQAIVYIEDRLLEPFNLQELSDYVGLSPYHLDQSFKMIVGLSPEAYARARKMTLAANDVINGATRLVDIAKKY
HYANSNDFANDFSDFHGVSPIQASTKKDELQIQERLYIKLSTTERAPYPYRLEETDDISLVGYARFIDTKYLSHPFNVPD
FLEDLLIDGKIKELRRYNDVSPFELFVISCPLENGLEIFVGVPSERYPAHLESRFLPGKHCAKFNLQGEIDYATNEAWYY
IESSLQLTLPYERNDLYVEVYPLDISFNDPFTKIQLWIPVKQSPYDED

Sequences:

>Translated_288_residues
MDVIKQIQQAIVYIEDRLLEPFNLQELSDYVGLSPYHLDQSFKMIVGLSPEAYARARKMTLAANDVINGATRLVDIAKKY
HYANSNDFANDFSDFHGVSPIQASTKKDELQIQERLYIKLSTTERAPYPYRLEETDDISLVGYARFIDTKYLSHPFNVPD
FLEDLLIDGKIKELRRYNDVSPFELFVISCPLENGLEIFVGVPSERYPAHLESRFLPGKHCAKFNLQGEIDYATNEAWYY
IESSLQLTLPYERNDLYVEVYPLDISFNDPFTKIQLWIPVKQSPYDED
>Mature_288_residues
MDVIKQIQQAIVYIEDRLLEPFNLQELSDYVGLSPYHLDQSFKMIVGLSPEAYARARKMTLAANDVINGATRLVDIAKKY
HYANSNDFANDFSDFHGVSPIQASTKKDELQIQERLYIKLSTTERAPYPYRLEETDDISLVGYARFIDTKYLSHPFNVPD
FLEDLLIDGKIKELRRYNDVSPFELFVISCPLENGLEIFVGVPSERYPAHLESRFLPGKHCAKFNLQGEIDYATNEAWYY
IESSLQLTLPYERNDLYVEVYPLDISFNDPFTKIQLWIPVKQSPYDED

Specific function: Binds To The Right Arm Of The Replication Origin Oric Of The E.Coli Chromosome. Rob Binding May Influence The Formation Of The Nucleoprotein Structure, Required For Oric Function In The Initiation Of Replication. [C]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33409; Mature: 33409

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVIKQIQQAIVYIEDRLLEPFNLQELSDYVGLSPYHLDQSFKMIVGLSPEAYARARKMT
CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCEECCCCEEEEEECCCHHHHHHHHEE
LAANDVINGATRLVDIAKKYHYANSNDFANDFSDFHGVSPIQASTKKDELQIQERLYIKL
EEHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHEEEEEEEEEE
STTERAPYPYRLEETDDISLVGYARFIDTKYLSHPFNVPDFLEDLLIDGKIKELRRYNDV
ECCCCCCCCEECCCCCCEEEEEHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCC
SPFELFVISCPLENGLEIFVGVPSERYPAHLESRFLPGKHCAKFNLQGEIDYATNEAWYY
CCEEEEEEECCCCCCCEEEEECCCCCCCCHHHHCCCCCCCCEEEECCEEEEEECCCEEEE
IESSLQLTLPYERNDLYVEVYPLDISFNDPFTKIQLWIPVKQSPYDED
EECCEEEEECCCCCCEEEEEEEEEEECCCCCEEEEEEEECCCCCCCCC
>Mature Secondary Structure
MDVIKQIQQAIVYIEDRLLEPFNLQELSDYVGLSPYHLDQSFKMIVGLSPEAYARARKMT
CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCEECCCCEEEEEECCCHHHHHHHHEE
LAANDVINGATRLVDIAKKYHYANSNDFANDFSDFHGVSPIQASTKKDELQIQERLYIKL
EEHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHEEEEEEEEEE
STTERAPYPYRLEETDDISLVGYARFIDTKYLSHPFNVPDFLEDLLIDGKIKELRRYNDV
ECCCCCCCCEECCCCCCEEEEEHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCC
SPFELFVISCPLENGLEIFVGVPSERYPAHLESRFLPGKHCAKFNLQGEIDYATNEAWYY
CCEEEEEEECCCCCCCEEEEECCCCCCCCHHHHCCCCCCCCEEEECCEEEEEECCCEEEE
IESSLQLTLPYERNDLYVEVYPLDISFNDPFTKIQLWIPVKQSPYDED
EECCEEEEECCCCCCEEEEEEEEEEECCCCCEEEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]