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The map label for this gene is dus [H]

Identifier: 15925787

GI number: 15925787

Start: 89609

End: 89947

Strand: Reverse

Name: dus [H]

Synonym: SA0079

Alternate gene names: 15925787

Gene position: 89947-89609 (Counterclockwise)

Preceding gene: 15925788

Following gene: 15925784

Centisome position: 3.2

GC content: 37.46

Gene sequence:

>339_bases
ATAATGTGCAAGTTGGAGTGGGACGACGAAATAAATTTTGGGAAAATATCATTTCTGTCCCACTCCCATATTCCCGATAG
AAAAACAGGACTTGAACTTGCAGAAAAATATGGCATTGATGGCGTCATGATTGGTAGCGGCATTTTCCATAATCCATTCG
CTTTTGAAAAAGAACCACGCGAACACACAAGCAAGGAACTATTAGATCTGTTGAGATTGCATTTATCATTGTTTAACAAA
TATGAAAAAGATGAAATACGACAATTCAAGAGTTTGCGTAGATTCTTTAAAATCTATGTGCGTGGCATAAGAGCGCTAGC
GAACTTCGACATCAATTGA

Upstream 100 bases:

>100_bases
ATATTGGCAGTAGTTGACTGAACGAAAATGCACTTGTAACAAGTTTTTTCAATTCTAGTCAGGGGCCCCAACATAGTAGC
TGGCGGAAAGTCAGCTTACA

Downstream 100 bases:

>100_bases
TGAACACACAATCAATTGCAGAAGCACGAGCATTACTAGATGAATTTGAAGCCCAAATGGACGAAGACGTTAAAATTGAA
TTATAGTATGAGTAATAAGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 112; Mature: 112

Protein sequence:

>112_residues
MMCKLEWDDEINFGKISFLSHSHIPDRKTGLELAEKYGIDGVMIGSGIFHNPFAFEKEPREHTSKELLDLLRLHLSLFNK
YEKDEIRQFKSLRRFFKIYVRGIRALANFDIN

Sequences:

>Translated_112_residues
MMCKLEWDDEINFGKISFLSHSHIPDRKTGLELAEKYGIDGVMIGSGIFHNPFAFEKEPREHTSKELLDLLRLHLSLFNK
YEKDEIRQFKSLRRFFKIYVRGIRALANFDIN
>Mature_112_residues
MMCKLEWDDEINFGKISFLSHSHIPDRKTGLELAEKYGIDGVMIGSGIFHNPFAFEKEPREHTSKELLDLLRLHLSLFNK
YEKDEIRQFKSLRRFFKIYVRGIRALANFDIN

Specific function: Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs [H]

COG id: COG0042

COG function: function code J; tRNA-dihydrouridine synthase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dus family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR001269
- InterPro:   IPR018517 [H]

Pfam domain/function: PF01207 Dus [H]

EC number: NA

Molecular weight: Translated: 13263; Mature: 13263

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMCKLEWDDEINFGKISFLSHSHIPDRKTGLELAEKYGIDGVMIGSGIFHNPFAFEKEPR
CCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCH
EHTSKELLDLLRLHLSLFNKYEKDEIRQFKSLRRFFKIYVRGIRALANFDIN
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MMCKLEWDDEINFGKISFLSHSHIPDRKTGLELAEKYGIDGVMIGSGIFHNPFAFEKEPR
CCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCH
EHTSKELLDLLRLHLSLFNKYEKDEIRQFKSLRRFFKIYVRGIRALANFDIN
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA