Click here to switch to the map view.

The map label for this gene is radC

Identifier: 15925760

GI number: 15925760

Start: 61269

End: 61586

Strand: Reverse

Name: radC

Synonym: SA0053

Alternate gene names: 15925760

Gene position: 61586-61269 (Counterclockwise)

Preceding gene: 15925761

Following gene: 15925759

Centisome position: 2.19

GC content: 33.96

Gene sequence:

>318_bases
ATGAAGGAAATCAATATTGTTTCACTACAAATGATAAAAACAGATACATTAAGTTATCTAAAAAATCGTATTTCAAACCC
TGAGGATGCGGCAGAAATCATGCGTTCATTCATTGGAAACAGTGACCGAGAGCATCTCATTCTCATATGTATGAACAGTA
AAAATGAACCTACACATATTCAAACACTATCGATTGGATCTATTAACCAAACGGTGATTCACCCTAGAGAAATATTCAAA
ACAGCGATACTCAGTAACGCAAATAGTATAATGCTCGGTCATAATCATCCAAGTGGAGATGTATTAACCATAGTATAA

Upstream 100 bases:

>100_bases
AGCTCATTAATCCAGCCACAAATGAAATCATGCACCCACTCAACCCTAAAGCACGTCAAAAATGGACTTTGAAAGCATAA
CCTATATATGGAGGTAAACG

Downstream 100 bases:

>100_bases
TAAATAATAGTAGTTAAAGTAGTTTAAGAGGAGATATTAAAGGGATATTTTACTTTAAATAAAAATTAACAAGGTTTATA
ATTTGTAGTAGTTAAAGTAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 105; Mature: 105

Protein sequence:

>105_residues
MKEINIVSLQMIKTDTLSYLKNRISNPEDAAEIMRSFIGNSDREHLILICMNSKNEPTHIQTLSIGSINQTVIHPREIFK
TAILSNANSIMLGHNHPSGDVLTIV

Sequences:

>Translated_105_residues
MKEINIVSLQMIKTDTLSYLKNRISNPEDAAEIMRSFIGNSDREHLILICMNSKNEPTHIQTLSIGSINQTVIHPREIFK
TAILSNANSIMLGHNHPSGDVLTIV
>Mature_105_residues
MKEINIVSLQMIKTDTLSYLKNRISNPEDAAEIMRSFIGNSDREHLILICMNSKNEPTHIQTLSIGSINQTVIHPREIFK
TAILSNANSIMLGHNHPSGDVLTIV

Specific function: Unknown

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI1788997, Length=77, Percent_Identity=35.0649350649351, Blast_Score=64, Evalue=2e-12,
Organism=Escherichia coli, GI1788312, Length=60, Percent_Identity=43.3333333333333, Blast_Score=62, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 11739; Mature: 11739

Theoretical pI: Translated: 7.07; Mature: 7.07

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEINIVSLQMIKTDTLSYLKNRISNPEDAAEIMRSFIGNSDREHLILICMNSKNEPTHI
CCCCEEEEEEEECHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEE
QTLSIGSINQTVIHPREIFKTAILSNANSIMLGHNHPSGDVLTIV
EEEECCCCCCEEECHHHHHHHHHHCCCCEEEEECCCCCCCEEEEC
>Mature Secondary Structure
MKEINIVSLQMIKTDTLSYLKNRISNPEDAAEIMRSFIGNSDREHLILICMNSKNEPTHI
CCCCEEEEEEEECHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEE
QTLSIGSINQTVIHPREIFKTAILSNANSIMLGHNHPSGDVLTIV
EEEECCCCCCEEECHHHHHHHHHHCCCCEEEEECCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA