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The map label for this gene is ywbI [H]

Identifier: 15925532

GI number: 15925532

Start: 2685425

End: 2686312

Strand: Reverse

Name: ywbI [H]

Synonym: SAV2542

Alternate gene names: 15925532

Gene position: 2686312-2685425 (Counterclockwise)

Preceding gene: 15925535

Following gene: 15925531

Centisome position: 93.32

GC content: 33.78

Gene sequence:

>888_bases
ATGATGTTAGTGGATATCAAACATATGAAATATTTTATTGAAGTCGTTAAGCAAGGAGGCATGACTAATGCCTCCAAATC
ATTATATATTGCACAACCTACAATTAGTAAAGCAATTAAAGATATTGAAAATGAAATGGGCACGCCCTTATTTGATAGAA
GTAAAAGACATTTAATACTTACCGATGCAGGTCAAATTTTTTATGAGAAAAGTAAAGAAATTGTTGCACTGTATGATTAT
TTACCATCTGAAATGGAACGCTTGAATGGACTGGAAACAGGGCATATAAACATGGGCATGTCGGCAGTCATGAATATGAA
GATTCTTATCAATATTCTTGGTGCATTCCATCAGCAATATCCAAATGTTACATATAATTTAATAGAAAATGGCGGCAAAA
CGATTGAGCAGCAAATTATCAATGATGAAGTAGATATAGGCGTGACCACTTTGCCAGTCGATCATCATATTTTCGATTAT
ACTACCCTAGATAAGGAAGATTTGCGACTTATCGTGAGCAGAGAGCATCGACTCGCAAAATATGAAACTGTTAAACTCGA
AGATTTAGCAGGTGAAGACTTCATTTTATTTAATAAAGACTTTTACTTGAATGATAAAATTATTGAAAATGCTAAAAACG
TTGGCTTTGTTCCGAATACTGTAGCGCAAATTTCACAATGGCATGTTATAGAAGATTTAGTTACGAATGAATTAGGTATT
AGTATTTTACCAACATCAATTTCAGAGCAACTAAATGGAGATGTGAAGCTGCTACGCATTGAAGATGCGCATGTACATTG
GGAATTAGGTGTTGTTTGGAAGAAGGATAAACAATTAAGTCATGCCACAACGAAATGGATAGAATTTTTGAAAGATCGTT
TAGGCTAA

Upstream 100 bases:

>100_bases
ATTTTACATAAAACTTTTTATAAAGCAATTTTATAAATCTAAATTTATTGAATGTTTAAGAAGTTGTGTATAATGAAATA
AACGTGTTGAAATAGTTAGG

Downstream 100 bases:

>100_bases
CATATTAATAAAGCACTCATTATTTAAGGCGCATCATTACGTGGGTCATTGAAATGATGAGTGTTTTTTTGTGAAAATGA
AGTGAAATTGAGAGAGCGTT

Product: transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MMLVDIKHMKYFIEVVKQGGMTNASKSLYIAQPTISKAIKDIENEMGTPLFDRSKRHLILTDAGQIFYEKSKEIVALYDY
LPSEMERLNGLETGHINMGMSAVMNMKILINILGAFHQQYPNVTYNLIENGGKTIEQQIINDEVDIGVTTLPVDHHIFDY
TTLDKEDLRLIVSREHRLAKYETVKLEDLAGEDFILFNKDFYLNDKIIENAKNVGFVPNTVAQISQWHVIEDLVTNELGI
SILPTSISEQLNGDVKLLRIEDAHVHWELGVVWKKDKQLSHATTKWIEFLKDRLG

Sequences:

>Translated_295_residues
MMLVDIKHMKYFIEVVKQGGMTNASKSLYIAQPTISKAIKDIENEMGTPLFDRSKRHLILTDAGQIFYEKSKEIVALYDY
LPSEMERLNGLETGHINMGMSAVMNMKILINILGAFHQQYPNVTYNLIENGGKTIEQQIINDEVDIGVTTLPVDHHIFDY
TTLDKEDLRLIVSREHRLAKYETVKLEDLAGEDFILFNKDFYLNDKIIENAKNVGFVPNTVAQISQWHVIEDLVTNELGI
SILPTSISEQLNGDVKLLRIEDAHVHWELGVVWKKDKQLSHATTKWIEFLKDRLG
>Mature_295_residues
MMLVDIKHMKYFIEVVKQGGMTNASKSLYIAQPTISKAIKDIENEMGTPLFDRSKRHLILTDAGQIFYEKSKEIVALYDY
LPSEMERLNGLETGHINMGMSAVMNMKILINILGAFHQQYPNVTYNLIENGGKTIEQQIINDEVDIGVTTLPVDHHIFDY
TTLDKEDLRLIVSREHRLAKYETVKLEDLAGEDFILFNKDFYLNDKIIENAKNVGFVPNTVAQISQWHVIEDLVTNELGI
SILPTSISEQLNGDVKLLRIEDAHVHWELGVVWKKDKQLSHATTKWIEFLKDRLG

Specific function: Positive Regulatory Protein For The Cyn Operon. [C]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=247, Percent_Identity=27.1255060728745, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI1787879, Length=292, Percent_Identity=27.3972602739726, Blast_Score=117, Evalue=9e-28,
Organism=Escherichia coli, GI145693105, Length=287, Percent_Identity=23.6933797909408, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI2367136, Length=287, Percent_Identity=24.390243902439, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1788887, Length=299, Percent_Identity=24.7491638795987, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1787601, Length=185, Percent_Identity=27.5675675675676, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1790399, Length=293, Percent_Identity=20.8191126279863, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1788297, Length=253, Percent_Identity=22.9249011857708, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI1788748, Length=291, Percent_Identity=21.9931271477663, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI1789506, Length=295, Percent_Identity=20, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1787530, Length=285, Percent_Identity=23.5087719298246, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1788481, Length=293, Percent_Identity=23.8907849829352, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI87081904, Length=177, Percent_Identity=25.9887005649718, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1789204, Length=202, Percent_Identity=25.2475247524752, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787806, Length=251, Percent_Identity=20.3187250996016, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1789639, Length=123, Percent_Identity=26.8292682926829, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790262, Length=244, Percent_Identity=20.4918032786885, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1786401, Length=307, Percent_Identity=20.8469055374593, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1786713, Length=183, Percent_Identity=22.9508196721311, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33815; Mature: 33815

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMLVDIKHMKYFIEVVKQGGMTNASKSLYIAQPTISKAIKDIENEMGTPLFDRSKRHLIL
CEEEEHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCCCCCEEEE
TDAGQIFYEKSKEIVALYDYLPSEMERLNGLETGHINMGMSAVMNMKILINILGAFHQQY
ECCCHHHHHCCCCEEEHHHHCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
PNVTYNLIENGGKTIEQQIINDEVDIGVTTLPVDHHIFDYTTLDKEDLRLIVSREHRLAK
CCCEEEEHHCCCHHHHHHHCCCCCCCCEEEEECCCCEECEECCCHHHHHHHHHHCHHHHH
YETVKLEDLAGEDFILFNKDFYLNDKIIENAKNVGFVPNTVAQISQWHVIEDLVTNELGI
HEEEEEHHCCCCEEEEECCCEEECHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
SILPTSISEQLNGDVKLLRIEDAHVHWELGVVWKKDKQLSHATTKWIEFLKDRLG
EEECCHHHHHCCCCEEEEEEECCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MMLVDIKHMKYFIEVVKQGGMTNASKSLYIAQPTISKAIKDIENEMGTPLFDRSKRHLIL
CEEEEHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCCCCCEEEE
TDAGQIFYEKSKEIVALYDYLPSEMERLNGLETGHINMGMSAVMNMKILINILGAFHQQY
ECCCHHHHHCCCCEEEHHHHCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
PNVTYNLIENGGKTIEQQIINDEVDIGVTTLPVDHHIFDYTTLDKEDLRLIVSREHRLAK
CCCEEEEHHCCCHHHHHHHCCCCCCCCEEEEECCCCEECEECCCHHHHHHHHHHCHHHHH
YETVKLEDLAGEDFILFNKDFYLNDKIIENAKNVGFVPNTVAQISQWHVIEDLVTNELGI
HEEEEEHHCCCCEEEEECCCEEECHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
SILPTSISEQLNGDVKLLRIEDAHVHWELGVVWKKDKQLSHATTKWIEFLKDRLG
EEECCHHHHHCCCCEEEEEEECCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]