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The map label for this gene is ycfH [C]

Identifier: 15922370

GI number: 15922370

Start: 2059702

End: 2060430

Strand: Direct

Name: ycfH [C]

Synonym: ST2051

Alternate gene names: 15922370

Gene position: 2059702-2060430 (Clockwise)

Preceding gene: 15922369

Following gene: 15922374

Centisome position: 76.43

GC content: 27.85

Gene sequence:

>729_bases
ATGCTAGTAGATGCGCACGCTCATATAGATATTAAGGATTTTGATAAAGATAGAGATCAAATACTAAAAAAATGTAACAT
AATAGTAGTAAATGCCGGAGTAGATTTAGAAAGTAATTTAAAATCTCTCGAATTAGAAAAAAAGTACAGTAATGTTATCG
CAGCAGTAGGATTTCACCCCGAATTTGTTAAAAACAAAATAAATGAATTAGATAAATGTTTAGAACTTGTTGAAAAGGCA
AGAATAATTAGTGAAGTTGGATTAGATTATTTTTGGATAAAAGAAGATGAACTAAGAAAGAAAGAAATAGAGATCTTGTC
TAGGTTTTTAGAGATAGGTGAAAAAGAGCAAAAACCATTAATTATACACGTTAGAGGAGGATTTAATGACCTTGTTACCA
TTTTATCATCATATAAGGTTAAGTTTGTTATTCATGCATTTGAAGGAAGTATAAAAAATGCAAAAAGAGTTATTGAATTA
GGTGGATTAATCTCTATGCCTCCAATACTTTTGAGAGATAAAACAAGACAAGAGATCATAAAAAATGTGGACTTAGAATA
TATTTTAACTGAAACTGATTCACCTTTTATGGCTCATGAGAAGATGATTAGAAACGAACCATGTAATGTACAATTAACAA
TAGAGAAGATTGCAGAATTAAAAAACATTGATATTCAAGAAGTAGAGAAAAAAATAGAAAATAACTTTAAAAAGTTACTT
CATTTATGA

Upstream 100 bases:

>100_bases
AAAGGTAGTTTTCGATGAGAACGAAAACGTAATTAAAATTCAAGTACTGAGAGAACCATGGAAATAAACATAAATTTTCT
TTTTTCTCTTCTTTTATTAA

Downstream 100 bases:

>100_bases
CTTTCTTCCTCTTCTGTTGGTGCAAAATATACGAATAGGAAGTACGCTAGAAAGCCGATAAATGCTGCAATAGTAAATGG
CAGTACATAAGGTACGGCAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MLVDAHAHIDIKDFDKDRDQILKKCNIIVVNAGVDLESNLKSLELEKKYSNVIAAVGFHPEFVKNKINELDKCLELVEKA
RIISEVGLDYFWIKEDELRKKEIEILSRFLEIGEKEQKPLIIHVRGGFNDLVTILSSYKVKFVIHAFEGSIKNAKRVIEL
GGLISMPPILLRDKTRQEIIKNVDLEYILTETDSPFMAHEKMIRNEPCNVQLTIEKIAELKNIDIQEVEKKIENNFKKLL
HL

Sequences:

>Translated_242_residues
MLVDAHAHIDIKDFDKDRDQILKKCNIIVVNAGVDLESNLKSLELEKKYSNVIAAVGFHPEFVKNKINELDKCLELVEKA
RIISEVGLDYFWIKEDELRKKEIEILSRFLEIGEKEQKPLIIHVRGGFNDLVTILSSYKVKFVIHAFEGSIKNAKRVIEL
GGLISMPPILLRDKTRQEIIKNVDLEYILTETDSPFMAHEKMIRNEPCNVQLTIEKIAELKNIDIQEVEKKIENNFKKLL
HL
>Mature_242_residues
MLVDAHAHIDIKDFDKDRDQILKKCNIIVVNAGVDLESNLKSLELEKKYSNVIAAVGFHPEFVKNKINELDKCLELVEKA
RIISEVGLDYFWIKEDELRKKEIEILSRFLEIGEKEQKPLIIHVRGGFNDLVTILSSYKVKFVIHAFEGSIKNAKRVIEL
GGLISMPPILLRDKTRQEIIKNVDLEYILTETDSPFMAHEKMIRNEPCNVQLTIEKIAELKNIDIQEVEKKIENNFKKLL
HL

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=264, Percent_Identity=29.9242424242424, Blast_Score=115, Evalue=5e-26,
Organism=Homo sapiens, GI110349734, Length=264, Percent_Identity=29.9242424242424, Blast_Score=110, Evalue=1e-24,
Organism=Homo sapiens, GI226061614, Length=253, Percent_Identity=30.0395256916996, Blast_Score=110, Evalue=1e-24,
Organism=Homo sapiens, GI226061853, Length=271, Percent_Identity=29.1512915129151, Blast_Score=108, Evalue=5e-24,
Organism=Homo sapiens, GI226061595, Length=226, Percent_Identity=27.8761061946903, Blast_Score=78, Evalue=7e-15,
Organism=Homo sapiens, GI14042943, Length=244, Percent_Identity=25.4098360655738, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI225903439, Length=244, Percent_Identity=25.4098360655738, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI1787342, Length=258, Percent_Identity=28.6821705426357, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI87082439, Length=261, Percent_Identity=25.2873563218391, Blast_Score=80, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI71980746, Length=258, Percent_Identity=24.8062015503876, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17559024, Length=285, Percent_Identity=24.9122807017544, Blast_Score=74, Evalue=5e-14,
Organism=Drosophila melanogaster, GI24648690, Length=286, Percent_Identity=24.4755244755245, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI221330018, Length=243, Percent_Identity=25.5144032921811, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24586117, Length=243, Percent_Identity=25.5144032921811, Blast_Score=68, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 28015; Mature: 28015

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: PS01137 TATD_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVDAHAHIDIKDFDKDRDQILKKCNIIVVNAGVDLESNLKSLELEKKYSNVIAAVGFHP
CEECCCCCEEHHHCCCCHHHHHHHCCEEEEECCCCCHHCHHHHHHHHHHHHHHHHCCCCH
EFVKNKINELDKCLELVEKARIISEVGLDYFWIKEDELRKKEIEILSRFLEIGEKEQKPL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCCCE
IIHVRGGFNDLVTILSSYKVKFVIHAFEGSIKNAKRVIELGGLISMPPILLRDKTRQEII
EEEECCCHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCHHHCCCHHHHHH
KNVDLEYILTETDSPFMAHEKMIRNEPCNVQLTIEKIAELKNIDIQEVEKKIENNFKKLL
HCCCEEEEEECCCCCHHHHHHHHHCCCCCEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHH
HL
CC
>Mature Secondary Structure
MLVDAHAHIDIKDFDKDRDQILKKCNIIVVNAGVDLESNLKSLELEKKYSNVIAAVGFHP
CEECCCCCEEHHHCCCCHHHHHHHCCEEEEECCCCCHHCHHHHHHHHHHHHHHHHCCCCH
EFVKNKINELDKCLELVEKARIISEVGLDYFWIKEDELRKKEIEILSRFLEIGEKEQKPL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCCCE
IIHVRGGFNDLVTILSSYKVKFVIHAFEGSIKNAKRVIELGGLISMPPILLRDKTRQEII
EEEECCCHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCHHHCCCHHHHHH
KNVDLEYILTETDSPFMAHEKMIRNEPCNVQLTIEKIAELKNIDIQEVEKKIENNFKKLL
HCCCEEEEEECCCCCHHHHHHHHHCCCCCEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHH
HL
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]