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The map label for this gene is lrs14 [H]

Identifier: 15922180

GI number: 15922180

Start: 1879441

End: 1879824

Strand: Reverse

Name: lrs14 [H]

Synonym: ST1867

Alternate gene names: 15922180

Gene position: 1879824-1879441 (Counterclockwise)

Preceding gene: 15922181

Following gene: 15922179

Centisome position: 69.76

GC content: 29.95

Gene sequence:

>384_bases
ATGGAATTAGAAGTAACTAAAATAAGACTAACTAGTGGTAAAGAAGTAGGAATAATAGAGGCTTTAAGTTTTTGCTATGA
TATTTCAGATACAGATTTTCAAGTACTAAAAGTTTTATTAAACAGTGAAGGAAAGAATGAAGATTCTTTAGCAGAAATGC
TAAAATTATCTAAAGCCTCTATCAACAGAAGTGTAAATAAATTAGTATCTTTAGGTTTTGTTGAAAGAGTAAAAGATTCT
TCTTCTAAAGGAGGTAGACCTAGATATATCTATAAGGCTATACCAACTGAGAGATTAATAGAGAAAATAGTTAATGATTT
CAAGAGATGTGCCGAGCTCTTCGGACAATTAATTCCTAAGGAGTTAGGGAAACAACAACAATAA

Upstream 100 bases:

>100_bases
ATTAGAAATGTGAAGATTAGGTTTTAATACTTGGGTAATCTATTTGCTTAAAATACAAAGATTTAAATACTTGTATTTAA
ACTATATATCATGATTAAGT

Downstream 100 bases:

>100_bases
TTAGGACACAACATTTTATTTTTTCATTTTCATTTTAATTTATGAGAATACTTATTGCTGGTTTAGGTTTTATAGCAACT
CATGTAGCTGAAGTCTTATC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 127; Mature: 127

Protein sequence:

>127_residues
MELEVTKIRLTSGKEVGIIEALSFCYDISDTDFQVLKVLLNSEGKNEDSLAEMLKLSKASINRSVNKLVSLGFVERVKDS
SSKGGRPRYIYKAIPTERLIEKIVNDFKRCAELFGQLIPKELGKQQQ

Sequences:

>Translated_127_residues
MELEVTKIRLTSGKEVGIIEALSFCYDISDTDFQVLKVLLNSEGKNEDSLAEMLKLSKASINRSVNKLVSLGFVERVKDS
SSKGGRPRYIYKAIPTERLIEKIVNDFKRCAELFGQLIPKELGKQQQ
>Mature_127_residues
MELEVTKIRLTSGKEVGIIEALSFCYDISDTDFQVLKVLLNSEGKNEDSLAEMLKLSKASINRSVNKLVSLGFVERVKDS
SSKGGRPRYIYKAIPTERLIEKIVNDFKRCAELFGQLIPKELGKQQQ

Specific function: Acts in transcription regulation. Binds to multiple sequences in its own promoter [H]

COG id: COG3355

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002831
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01978 TrmB [H]

EC number: NA

Molecular weight: Translated: 14325; Mature: 14325

Theoretical pI: Translated: 9.14; Mature: 9.14

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELEVTKIRLTSGKEVGIIEALSFCYDISDTDFQVLKVLLNSEGKNEDSLAEMLKLSKAS
CCCCEEEEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
INRSVNKLVSLGFVERVKDSSSKGGRPRYIYKAIPTERLIEKIVNDFKRCAELFGQLIPK
HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
ELGKQQQ
HCCCCCC
>Mature Secondary Structure
MELEVTKIRLTSGKEVGIIEALSFCYDISDTDFQVLKVLLNSEGKNEDSLAEMLKLSKAS
CCCCEEEEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
INRSVNKLVSLGFVERVKDSSSKGGRPRYIYKAIPTERLIEKIVNDFKRCAELFGQLIPK
HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
ELGKQQQ
HCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10049378; 11427726 [H]