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The map label for this gene is ygcF [H]

Identifier: 15921783

GI number: 15921783

Start: 1485742

End: 1486380

Strand: Reverse

Name: ygcF [H]

Synonym: ST1490

Alternate gene names: 15921783

Gene position: 1486380-1485742 (Counterclockwise)

Preceding gene: 15921784

Following gene: 15921781

Centisome position: 55.16

GC content: 30.2

Gene sequence:

>639_bases
ATGGTCAAATACTGGATAAGCGAGATATTTACCTCAATTCAGGGTGAAGGAGAAGTTATAGGAACACCTTCTAATTTTAT
TAGACTAGCTGGATGCCATTTAAGATGCATATGGTGTGATACAAAATATGCTTGGCACAAATATGATGGAGAGGAAATGA
GTATAGAACAGATTCTTGATAAAATTGATAAAAGAATTAAATTTACTACGATAACAGGCGGGGAACCATTACTTCAAGAT
ATTTTACCATTAGTTGAAGCATTAAAATCACTTAATCATAAAGTTTTAGTAGAAACAAGTGGTACTATAAAACCATCTAA
AAAACTAAGAGAACTTGTTGATATATTTTCTGTTTCTCCTAAGTTGTCTAATTCTGGGTATAAATTTAAATATAATTTTA
AAGATGATAATTGGGTAACATATTTTAAATTTGTTATAGTGAATCCACTAGAGGATATTCAAGAAATAATAAGATTTATA
AGAGAGAATAATATTGAACCAAGCAAAGTTATTCTTCAACCCGACGGAAGAAAAGAGAATTATACGGAAGGCTTAAGAGA
GCTTATTGATATTATATTGAAACTCGGAATTCCCTTCAGAGTTCTTCCTCAATTCCATAGAATTGTTGGAATTCAATGA

Upstream 100 bases:

>100_bases
CAAATAAAGGAAAATATTCTTGAAAAAGTTTTTGAGATAAGCGCTGAGAAGAATATAGGATTAGATACACTTTTAAATTA
CGTTATTAACCTACTACAAA

Downstream 100 bases:

>100_bases
GTTCTCAACAACTTCTTTTAATTTGCGTAATTTCTCCTTTCCTTTCTGTAATACTTTGTTAGCAATTACTACTAGCTCAT
TAGCTTCTTTTTCATCATAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 212

Protein sequence:

>212_residues
MVKYWISEIFTSIQGEGEVIGTPSNFIRLAGCHLRCIWCDTKYAWHKYDGEEMSIEQILDKIDKRIKFTTITGGEPLLQD
ILPLVEALKSLNHKVLVETSGTIKPSKKLRELVDIFSVSPKLSNSGYKFKYNFKDDNWVTYFKFVIVNPLEDIQEIIRFI
RENNIEPSKVILQPDGRKENYTEGLRELIDIILKLGIPFRVLPQFHRIVGIQ

Sequences:

>Translated_212_residues
MVKYWISEIFTSIQGEGEVIGTPSNFIRLAGCHLRCIWCDTKYAWHKYDGEEMSIEQILDKIDKRIKFTTITGGEPLLQD
ILPLVEALKSLNHKVLVETSGTIKPSKKLRELVDIFSVSPKLSNSGYKFKYNFKDDNWVTYFKFVIVNPLEDIQEIIRFI
RENNIEPSKVILQPDGRKENYTEGLRELIDIILKLGIPFRVLPQFHRIVGIQ
>Mature_212_residues
MVKYWISEIFTSIQGEGEVIGTPSNFIRLAGCHLRCIWCDTKYAWHKYDGEEMSIEQILDKIDKRIKFTTITGGEPLLQD
ILPLVEALKSLNHKVLVETSGTIKPSKKLRELVDIFSVSPKLSNSGYKFKYNFKDDNWVTYFKFVIVNPLEDIQEIIRFI
RENNIEPSKVILQPDGRKENYTEGLRELIDIILKLGIPFRVLPQFHRIVGIQ

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=204, Percent_Identity=30.8823529411765, Blast_Score=93, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 24616; Mature: 24616

Theoretical pI: Translated: 8.05; Mature: 8.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKYWISEIFTSIQGEGEVIGTPSNFIRLAGCHLRCIWCDTKYAWHKYDGEEMSIEQILD
CHHHHHHHHHHHCCCCCCEEECCHHHEEEECCEEEEEEECCCCEEECCCCCCCCHHHHHH
KIDKRIKFTTITGGEPLLQDILPLVEALKSLNHKVLVETSGTIKPSKKLRELVDIFSVSP
HHHHCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCC
KLSNSGYKFKYNFKDDNWVTYFKFVIVNPLEDIQEIIRFIRENNIEPSKVILQPDGRKEN
CCCCCCEEEEEECCCCCEEEEEEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCH
YTEGLRELIDIILKLGIPFRVLPQFHRIVGIQ
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MVKYWISEIFTSIQGEGEVIGTPSNFIRLAGCHLRCIWCDTKYAWHKYDGEEMSIEQILD
CHHHHHHHHHHHCCCCCCEEECCHHHEEEECCEEEEEEECCCCEEECCCCCCCCHHHHHH
KIDKRIKFTTITGGEPLLQDILPLVEALKSLNHKVLVETSGTIKPSKKLRELVDIFSVSP
HHHHCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCC
KLSNSGYKFKYNFKDDNWVTYFKFVIVNPLEDIQEIIRFIRENNIEPSKVILQPDGRKEN
CCCCCCEEEEEECCCCCEEEEEEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCH
YTEGLRELIDIILKLGIPFRVLPQFHRIVGIQ
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]