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The map label for this gene is rpl39e

Identifier: 15921661

GI number: 15921661

Start: 1380110

End: 1380265

Strand: Reverse

Name: rpl39e

Synonym: STS169

Alternate gene names: 15921661

Gene position: 1380265-1380110 (Counterclockwise)

Preceding gene: 15921662

Following gene: 15921660

Centisome position: 51.22

GC content: 30.77

Gene sequence:

>156_bases
ATGAGTAAAAATAAACCTTTGGGGAGAAAATTAAGATTGGCTAGAGCATTAAAAAGTAATTCACCAGTACCAGCATGGGT
TATAATAAAAACAAATGGAAAGTTTAGATATAACTTCCACAGAAGAGATTGGAGAAGAAATGATTTAAAGGTGTAA

Upstream 100 bases:

>100_bases
AAGCGCCAATAACTGATGAAGAATTGAAAGAAATATTAGCACAATTAACTAATCAAACTAGAAAAGATTATAAGATTACA
ATTAGGGAAAGGGGTTGGAA

Downstream 100 bases:

>100_bases
AAAATGAAGGAGAAGGATAATTTCGAAATGGTAATCAATTTCAAGAGAGCTTTCATGGGAAGAAGAAATCAAAGAACCAA
AAGAGCAATCAAAATGATAA

Product: 50S ribosomal protein L39e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 51; Mature: 50

Protein sequence:

>51_residues
MSKNKPLGRKLRLARALKSNSPVPAWVIIKTNGKFRYNFHRRDWRRNDLKV

Sequences:

>Translated_51_residues
MSKNKPLGRKLRLARALKSNSPVPAWVIIKTNGKFRYNFHRRDWRRNDLKV
>Mature_50_residues
SKNKPLGRKLRLARALKSNSPVPAWVIIKTNGKFRYNFHRRDWRRNDLKV

Specific function: Unknown

COG id: COG2167

COG function: function code J; Ribosomal protein L39E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L39e family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL39_SULTO (Q971I1)

Other databases:

- EMBL:   BA000023
- RefSeq:   NP_377330.1
- ProteinModelPortal:   Q971I1
- SMR:   Q971I1
- GeneID:   1459401
- GenomeReviews:   BA000023_GR
- KEGG:   sto:STS169
- NMPDR:   fig|273063.1.peg.1498
- HOGENOM:   HBG727906
- OMA:   RNKPLGK
- ProtClustDB:   PRK01242
- BioCyc:   STOK273063:STS169-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00629
- InterPro:   IPR000077
- InterPro:   IPR020083
- Gene3D:   G3DSA:1.10.1620.10
- PANTHER:   PTHR19970

Pfam domain/function: PF00832 Ribosomal_L39; SSF48662 Ribosomal_L39

EC number: NA

Molecular weight: Translated: 6134; Mature: 6003

Theoretical pI: Translated: 12.53; Mature: 12.53

Prosite motif: PS00051 RIBOSOMAL_L39E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKNKPLGRKLRLARALKSNSPVPAWVIIKTNGKFRYNFHRRDWRRNDLKV
CCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCC
>Mature Secondary Structure 
SKNKPLGRKLRLARALKSNSPVPAWVIIKTNGKFRYNFHRRDWRRNDLKV
CCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11572479