Click here to switch to the map view.

The map label for this gene is 15921223

Identifier: 15921223

GI number: 15921223

Start: 958772

End: 959095

Strand: Reverse

Name: 15921223

Synonym: ST0980

Alternate gene names: NA

Gene position: 959095-958772 (Counterclockwise)

Preceding gene: 15921225

Following gene: 15921220

Centisome position: 35.59

GC content: 27.78

Gene sequence:

>324_bases
ATGAGTGAAAAGTTATATGATGCAAAAGATGTTATAAGATGTTGCTACAAACTTTCGGATACTGATATAGATTGCTTGTT
TAAACTTATTGAATTAAATAAGCCAGTAACGTCAGACGAACTTTCTCAAATGATGAAAGTAAGTAAGACTACAGTAGAGA
ATAGTTTAAAGAAACTAATTGATTCTGGCTTAGTAATAAGAAGTAAGAGTGAGGATAAGAAAATTGGTAGACCAAAATAT
TATTACTCTATAGTTGAAAATATAATTAATAAGATAAGAGAAGATTTGTTAAATTGCTCGAAGAAAATGCAATTATCATT
GTAG

Upstream 100 bases:

>100_bases
GCAGTTAAAAACTATTATATAACCTTTCATAGTATGATGTAAAATAAATGAACTAAAAAATTGATAAAGTTTTATTACTG
ATTACTCAATATTAAAACAT

Downstream 100 bases:

>100_bases
TATAGTTTCTTTTAATTTCTTTCTAATTTTATGTAATCTTTCTATATTTGTAAAGGAGTTTAATAAAAGGAATAAGGAAT
TAAAGTTAAATCCTAAAGCG

Product: transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TrmB; HTH-Type Transcriptional Regulator Lrs

Number of amino acids: Translated: 107; Mature: 106

Protein sequence:

>107_residues
MSEKLYDAKDVIRCCYKLSDTDIDCLFKLIELNKPVTSDELSQMMKVSKTTVENSLKKLIDSGLVIRSKSEDKKIGRPKY
YYSIVENIINKIREDLLNCSKKMQLSL

Sequences:

>Translated_107_residues
MSEKLYDAKDVIRCCYKLSDTDIDCLFKLIELNKPVTSDELSQMMKVSKTTVENSLKKLIDSGLVIRSKSEDKKIGRPKY
YYSIVENIINKIREDLLNCSKKMQLSL
>Mature_106_residues
SEKLYDAKDVIRCCYKLSDTDIDCLFKLIELNKPVTSDELSQMMKVSKTTVENSLKKLIDSGLVIRSKSEDKKIGRPKYY
YSIVENIINKIREDLLNCSKKMQLSL

Specific function: Unknown

COG id: COG3355

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12387; Mature: 12256

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
7.5 %Cys+Met (Translated Protein)
3.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEKLYDAKDVIRCCYKLSDTDIDCLFKLIELNKPVTSDELSQMMKVSKTTVENSLKKLI
CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
DSGLVIRSKSEDKKIGRPKYYYSIVENIINKIREDLLNCSKKMQLSL
HCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SEKLYDAKDVIRCCYKLSDTDIDCLFKLIELNKPVTSDELSQMMKVSKTTVENSLKKLI
CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
DSGLVIRSKSEDKKIGRPKYYYSIVENIINKIREDLLNCSKKMQLSL
HCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA