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The map label for this gene is ycfH [C]

Identifier: 15921170

GI number: 15921170

Start: 910283

End: 911002

Strand: Direct

Name: ycfH [C]

Synonym: ST0937

Alternate gene names: 15921170

Gene position: 910283-911002 (Clockwise)

Preceding gene: 15921169

Following gene: 15921171

Centisome position: 33.78

GC content: 29.86

Gene sequence:

>720_bases
ATGAAATTTATTAAGTCATATCTTTTTCTTTTTTATATGTATTATTATGATGCTCATTGTCATTATTCTTATTTAAAGAA
AAAATATGAAAACTTCATAATAGCAGCGGTTTCGATGGATTATTCTACGTCTATAGAAACTCTTTCCTTAAAATCTCCAG
ATATTTTAGCTGGTATTGGAATACATCCATGGAAGGTTCATGAAGAGAATTTAAATAAGGTTTTAGAGTTAGTAAGAAAG
GCTGATTTTATTGGGGAAGTAGGATTAGATTATAGATATGCTAAGGCTGATAAATCCATTCAATTAAAATATTTTGAGGC
TTTTGCTGAAGAGGCTTCTAACCAGAAAAAACTTATTAACGTTCATGCCCTCGATGCATGGGAAGATGCTTTCAATATTT
TACAAAAACATAATGTTAAAAGAGCGATCTTTCACTGGTATACTGGCCCAGAAAATTTATTAAAAGAAATAGAAGGAGCT
GGATATTTTATAACAGTAAATCCTTCAGTAACTTTTCAGAAAAAACACCAGAATATAGTTATTAAGTCACCTTTAGATAT
AATATTAACAGAAAGTGATGGAGGTTACGAATATAAAGGTAGATTATTAGAGCCTGTCCACATAGTTGAAGCAATTAAAG
AAATTTCTAAACTTAAAGGGACTTCCGAAGAGGAAGTTAATAAGATCGTAGAAAGAAACTTTAAAAAAGCATTTGGGTAA

Upstream 100 bases:

>100_bases
ATAGCATATTCTGGTACTGACATCTCCAAATACTTTATTGGTGGTGGTAAATTGGAATTAGAGTTTTATAATTTCTATGG
TAAGATAAACATAAGTGTGA

Downstream 100 bases:

>100_bases
AAGTTTATGATTATGGTTTAAGGTAAGGTAGATTATGAAAATTGCTATTATAACTGGTGCTTCTAAAGGAATTGGTAAGG
CTATAGCTATCAAGCTGAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MKFIKSYLFLFYMYYYDAHCHYSYLKKKYENFIIAAVSMDYSTSIETLSLKSPDILAGIGIHPWKVHEENLNKVLELVRK
ADFIGEVGLDYRYAKADKSIQLKYFEAFAEEASNQKKLINVHALDAWEDAFNILQKHNVKRAIFHWYTGPENLLKEIEGA
GYFITVNPSVTFQKKHQNIVIKSPLDIILTESDGGYEYKGRLLEPVHIVEAIKEISKLKGTSEEEVNKIVERNFKKAFG

Sequences:

>Translated_239_residues
MKFIKSYLFLFYMYYYDAHCHYSYLKKKYENFIIAAVSMDYSTSIETLSLKSPDILAGIGIHPWKVHEENLNKVLELVRK
ADFIGEVGLDYRYAKADKSIQLKYFEAFAEEASNQKKLINVHALDAWEDAFNILQKHNVKRAIFHWYTGPENLLKEIEGA
GYFITVNPSVTFQKKHQNIVIKSPLDIILTESDGGYEYKGRLLEPVHIVEAIKEISKLKGTSEEEVNKIVERNFKKAFG
>Mature_239_residues
MKFIKSYLFLFYMYYYDAHCHYSYLKKKYENFIIAAVSMDYSTSIETLSLKSPDILAGIGIHPWKVHEENLNKVLELVRK
ADFIGEVGLDYRYAKADKSIQLKYFEAFAEEASNQKKLINVHALDAWEDAFNILQKHNVKRAIFHWYTGPENLLKEIEGA
GYFITVNPSVTFQKKHQNIVIKSPLDIILTESDGGYEYKGRLLEPVHIVEAIKEISKLKGTSEEEVNKIVERNFKKAFG

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=205, Percent_Identity=27.8048780487805, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI110349734, Length=205, Percent_Identity=27.8048780487805, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI226061853, Length=212, Percent_Identity=27.3584905660377, Blast_Score=64, Evalue=9e-11,
Organism=Escherichia coli, GI1787342, Length=255, Percent_Identity=24.3137254901961, Blast_Score=73, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 27731; Mature: 27731

Theoretical pI: Translated: 7.82; Mature: 7.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFIKSYLFLFYMYYYDAHCHYSYLKKKYENFIIAAVSMDYSTSIETLSLKSPDILAGIG
CHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCEEEEEEECCCCCCEEEEECCCCCEEEECC
IHPWKVHEENLNKVLELVRKADFIGEVGLDYRYAKADKSIQLKYFEAFAEEASNQKKLIN
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEHHHHHHHHHHCCCCCEEEE
VHALDAWEDAFNILQKHNVKRAIFHWYTGPENLLKEIEGAGYFITVNPSVTFQKKHQNIV
EEECHHHHHHHHHHHHCCCHHEEEEEECCHHHHHHHHCCCCEEEEECCCEEEEECCCEEE
IKSPLDIILTESDGGYEYKGRLLEPVHIVEAIKEISKLKGTSEEEVNKIVERNFKKAFG
EECCCEEEEECCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKFIKSYLFLFYMYYYDAHCHYSYLKKKYENFIIAAVSMDYSTSIETLSLKSPDILAGIG
CHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCEEEEEEECCCCCCEEEEECCCCCEEEECC
IHPWKVHEENLNKVLELVRKADFIGEVGLDYRYAKADKSIQLKYFEAFAEEASNQKKLIN
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEHHHHHHHHHHCCCCCEEEE
VHALDAWEDAFNILQKHNVKRAIFHWYTGPENLLKEIEGAGYFITVNPSVTFQKKHQNIV
EEECHHHHHHHHHHHHCCCHHEEEEEECCHHHHHHHHCCCCEEEEECCCEEEEECCCEEE
IKSPLDIILTESDGGYEYKGRLLEPVHIVEAIKEISKLKGTSEEEVNKIVERNFKKAFG
EECCCEEEEECCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10993077 [H]