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The map label for this gene is aubA

Identifier: 15921066

GI number: 15921066

Start: 808662

End: 809900

Strand: Reverse

Name: aubA

Synonym: ST0831

Alternate gene names: 15921066

Gene position: 809900-808662 (Counterclockwise)

Preceding gene: 15921067

Following gene: 15921062

Centisome position: 30.05

GC content: 30.99

Gene sequence:

>1239_bases
ATGAAAGTTAGAATTAGAGGCATTTACGCTACAGCCCTAACAAAATTATTTTTAGATAATGGTTTTGAAATTGTTCAAGC
CACTCCACAAATCTCTGATCGTTTTTCTCTTCCTATCAGAGCTGAACCCTCAGATGTTACAATTAAAGATGGAAATGATA
AGGGAGAATTAATTAGTATTGGAGAAGACATTTACTCATTTTTACGTAAAACTTTTCAAAATTCTTTTATTTGGAAATCA
CCAGTTAGACTCTATTCGGTAATCGAAACTAATAACTGTAAGTTTATGGACTATCAGGTTGAACCTTGTTTAGATAAGGG
ATTAGTGGTTAAGCCTCCATCAGAGGGAAGAATTATTTTATCATCTCCAAAAGCAGTGGGTAAATATTCTATGGTTTGGA
GAGGAGACGGTAAAACATTCTTTTCAGAACACATAAGAGATAGAGAGGAAAAGACGAGACTCCTATCTATAAGTATTCCC
TTTAATAAAAAGGGGTATAATGTAAAGTGGAGGAGTAATGCTCCTTTTGCAAGCAATATTGTTCTTAAAGAAGAATTAGA
AAAATTAGCAATAAGGTTTGATAATAATGATTTTAGACAACAAGGTGAAGATTTCATAAAAGTTACAGTGTCTTTAGAAG
ATAAAATCATGTTAGATGAAATCAGAAAAAAGGTATTACCCAATACTATTAGATTTCATCATATGTTAAAAATGTCTTTT
TCGAATGAAGTTGATGAAATCGAGCAAACCTCTATGAATAATGAAGAGTTGTTAGATAAGCTGATTACTGACTACATGGG
TATTGAACATATTAAACCAGATGGTAGAAAATTTGAGCTAAAAGAAGGTAAGGTTATATACAAAGAGGTTAACTCAGACT
ATTATATTGTTAGATTAATGAGAGTCTTTTCAAGAGAAGGAATTTATGATGGACTAAACGTTAAGAAAGAGGAAGGAGAT
TACGATATTGTTGAGTTTGATTCAAGAAAATGGTATCAGATTCACAGATATTATAATAAAGATGGTAAGTTGAAGGGGAT
TTATGTTAATATTTCCACACCACCAGAATTACTCAGAGGTAAATTAAGGTATCTTGATTTAGAGGTTGATGTTGTTAAAG
TAGGAGACGAAGTTAGGATAATTGATTTAGAGGAATTAGAAAAGAACAAAGAGATCATAGGAGAGACAATGTATAAAAAA
ATATTTACCATAATAGAAGAAGTCAAAAAGATTCTTTAA

Upstream 100 bases:

>100_bases
GTGAAAGTTGTAGAAGGTTTAGTAAGAGTTGATACCAATGTTGAATTAGAATATGTACGTGAAGGTGGGGTTTTAAAGTA
TGTAATGAATAAATTATTAT

Downstream 100 bases:

>100_bases
AGTTTTTCTAGTTCTTCCCTACTGATAGGAATAATTTTAACAACATTCTCATTTTCGTCATATATCACTCTAACTAAATC
TCCTTCTCTTACTTTAACTT

Product: hypothetical protein

Products: NA

Alternate protein names: AU-binding protein

Number of amino acids: Translated: 412; Mature: 412

Protein sequence:

>412_residues
MKVRIRGIYATALTKLFLDNGFEIVQATPQISDRFSLPIRAEPSDVTIKDGNDKGELISIGEDIYSFLRKTFQNSFIWKS
PVRLYSVIETNNCKFMDYQVEPCLDKGLVVKPPSEGRIILSSPKAVGKYSMVWRGDGKTFFSEHIRDREEKTRLLSISIP
FNKKGYNVKWRSNAPFASNIVLKEELEKLAIRFDNNDFRQQGEDFIKVTVSLEDKIMLDEIRKKVLPNTIRFHHMLKMSF
SNEVDEIEQTSMNNEELLDKLITDYMGIEHIKPDGRKFELKEGKVIYKEVNSDYYIVRLMRVFSREGIYDGLNVKKEEGD
YDIVEFDSRKWYQIHRYYNKDGKLKGIYVNISTPPELLRGKLRYLDLEVDVVKVGDEVRIIDLEELEKNKEIIGETMYKK
IFTIIEEVKKIL

Sequences:

>Translated_412_residues
MKVRIRGIYATALTKLFLDNGFEIVQATPQISDRFSLPIRAEPSDVTIKDGNDKGELISIGEDIYSFLRKTFQNSFIWKS
PVRLYSVIETNNCKFMDYQVEPCLDKGLVVKPPSEGRIILSSPKAVGKYSMVWRGDGKTFFSEHIRDREEKTRLLSISIP
FNKKGYNVKWRSNAPFASNIVLKEELEKLAIRFDNNDFRQQGEDFIKVTVSLEDKIMLDEIRKKVLPNTIRFHHMLKMSF
SNEVDEIEQTSMNNEELLDKLITDYMGIEHIKPDGRKFELKEGKVIYKEVNSDYYIVRLMRVFSREGIYDGLNVKKEEGD
YDIVEFDSRKWYQIHRYYNKDGKLKGIYVNISTPPELLRGKLRYLDLEVDVVKVGDEVRIIDLEELEKNKEIIGETMYKK
IFTIIEEVKKIL
>Mature_412_residues
MKVRIRGIYATALTKLFLDNGFEIVQATPQISDRFSLPIRAEPSDVTIKDGNDKGELISIGEDIYSFLRKTFQNSFIWKS
PVRLYSVIETNNCKFMDYQVEPCLDKGLVVKPPSEGRIILSSPKAVGKYSMVWRGDGKTFFSEHIRDREEKTRLLSISIP
FNKKGYNVKWRSNAPFASNIVLKEELEKLAIRFDNNDFRQQGEDFIKVTVSLEDKIMLDEIRKKVLPNTIRFHHMLKMSF
SNEVDEIEQTSMNNEELLDKLITDYMGIEHIKPDGRKFELKEGKVIYKEVNSDYYIVRLMRVFSREGIYDGLNVKKEEGD
YDIVEFDSRKWYQIHRYYNKDGKLKGIYVNISTPPELLRGKLRYLDLEVDVVKVGDEVRIIDLEELEKNKEIIGETMYKK
IFTIIEEVKKIL

Specific function: Binds to RNA in loop regions with AU-rich sequences

COG id: COG1530

COG function: function code J; Ribonucleases G and E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AubA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): AUBA_SULTO (Q973R6)

Other databases:

- EMBL:   BA000023
- RefSeq:   NP_376735.1
- ProteinModelPortal:   Q973R6
- GeneID:   1458794
- GenomeReviews:   BA000023_GR
- KEGG:   sto:ST0831
- NMPDR:   fig|273063.1.peg.903
- HOGENOM:   HBG705374
- OMA:   RGIYSTA
- ProtClustDB:   CLSK2752042
- BioCyc:   STOK273063:ST0831-MONOMER
- HAMAP:   MF_01910
- InterPro:   IPR007295
- InterPro:   IPR016730
- PIRSF:   PIRSF018644

Pfam domain/function: PF04167 DUF402

EC number: NA

Molecular weight: Translated: 48240; Mature: 48240

Theoretical pI: Translated: 7.59; Mature: 7.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVRIRGIYATALTKLFLDNGFEIVQATPQISDRFSLPIRAEPSDVTIKDGNDKGELISI
CEEEEEEHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEECCCCCEEEECCCCCCCEEEE
GEDIYSFLRKTFQNSFIWKSPVRLYSVIETNNCKFMDYQVEPCLDKGLVVKPPSEGRIIL
CHHHHHHHHHHHCCCCEECCCCEEEEEEECCCEEEEEEECCCCCCCCEEEECCCCCEEEE
SSPKAVGKYSMVWRGDGKTFFSEHIRDREEKTRLLSISIPFNKKGYNVKWRSNAPFASNI
ECCCCCCCEEEEEECCCCHHHHHHHHCHHCCCEEEEEECCCCCCCCEEEECCCCCCHHCH
VLKEELEKLAIRFDNNDFRQQGEDFIKVTVSLEDKIMLDEIRKKVLPNTIRFHHMLKMSF
HHHHHHHHHEEEECCCHHHHCCCEEEEEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHH
SNEVDEIEQTSMNNEELLDKLITDYMGIEHIKPDGRKFELKEGKVIYKEVNSDYYIVRLM
CCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCEEEECCCEEEEEECCCCHHHHHHH
RVFSREGIYDGLNVKKEEGDYDIVEFDSRKWYQIHRYYNKDGKLKGIYVNISTPPELLRG
HHHHHCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHHHCC
KLRYLDLEVDVVKVGDEVRIIDLEELEKNKEIIGETMYKKIFTIIEEVKKIL
CEEEEEEEEEEEEECCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MKVRIRGIYATALTKLFLDNGFEIVQATPQISDRFSLPIRAEPSDVTIKDGNDKGELISI
CEEEEEEHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEECCCCCEEEECCCCCCCEEEE
GEDIYSFLRKTFQNSFIWKSPVRLYSVIETNNCKFMDYQVEPCLDKGLVVKPPSEGRIIL
CHHHHHHHHHHHCCCCEECCCCEEEEEEECCCEEEEEEECCCCCCCCEEEECCCCCEEEE
SSPKAVGKYSMVWRGDGKTFFSEHIRDREEKTRLLSISIPFNKKGYNVKWRSNAPFASNI
ECCCCCCCEEEEEECCCCHHHHHHHHCHHCCCEEEEEECCCCCCCCEEEECCCCCCHHCH
VLKEELEKLAIRFDNNDFRQQGEDFIKVTVSLEDKIMLDEIRKKVLPNTIRFHHMLKMSF
HHHHHHHHHEEEECCCHHHHCCCEEEEEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHH
SNEVDEIEQTSMNNEELLDKLITDYMGIEHIKPDGRKFELKEGKVIYKEVNSDYYIVRLM
CCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCEEEECCCEEEEEECCCCHHHHHHH
RVFSREGIYDGLNVKKEEGDYDIVEFDSRKWYQIHRYYNKDGKLKGIYVNISTPPELLRG
HHHHHCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHHHCC
KLRYLDLEVDVVKVGDEVRIIDLEELEKNKEIIGETMYKKIFTIIEEVKKIL
CEEEEEEEEEEEEECCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11572479