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The map label for this gene is 15920992

Identifier: 15920992

GI number: 15920992

Start: 739567

End: 739806

Strand: Reverse

Name: 15920992

Synonym: STS093

Alternate gene names: NA

Gene position: 739806-739567 (Counterclockwise)

Preceding gene: 15920993

Following gene: 15920991

Centisome position: 27.45

GC content: 35.0

Gene sequence:

>240_bases
ATGGGTGTTAATTTGGCTGAAACAGCACACAAGGTTCTCGCAGAATCTTTGGGTTCTACCGTATTAGTGAAATTAAAAGG
AGATAAAATTGTTAGAGGTACTCTTAAGAGTTATGATATGCATATGAACTTAGTATTAGAGAATTCTGAGGAAGTAATGA
GTGATGGTAGCACTAGGAAAGTAGGTACAATAATCATAAGAGGAGATAATGTAATATTAGTGTCACCAATGAGTCCTTAG

Upstream 100 bases:

>100_bases
TAGATGTGATAAATGAGCAGAGAAGAAAATCTTCTCACAAAGAGAATCTTCCACGTTGATACGAAGATAAAATATTTATA
CCGAATATCTTATACACAAT

Downstream 100 bases:

>100_bases
TCTAACAACTATATGTTATGTAGAGAATTTTCCTTTATCAAGTTATTCTAATTAAGAGAATACTTACGTTTTCTGCATTT
TGTTATTCTACTTCTAATTT

Product: small nuclear ribonucleoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 79; Mature: 78

Protein sequence:

>79_residues
MGVNLAETAHKVLAESLGSTVLVKLKGDKIVRGTLKSYDMHMNLVLENSEEVMSDGSTRKVGTIIIRGDNVILVSPMSP

Sequences:

>Translated_79_residues
MGVNLAETAHKVLAESLGSTVLVKLKGDKIVRGTLKSYDMHMNLVLENSEEVMSDGSTRKVGTIIIRGDNVILVSPMSP
>Mature_78_residues
GVNLAETAHKVLAESLGSTVLVKLKGDKIVRGTLKSYDMHMNLVLENSEEVMSDGSTRKVGTIIIRGDNVILVSPMSP

Specific function: Unknown

COG id: COG1958

COG function: function code K; Small nuclear ribonucleoprotein (snRNP) homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the snRNP Sm proteins family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR001163
- InterPro:   IPR006649
- InterPro:   IPR022901 [H]

Pfam domain/function: PF01423 LSM [H]

EC number: NA

Molecular weight: Translated: 8496; Mature: 8365

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.3 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVNLAETAHKVLAESLGSTVLVKLKGDKIVRGTLKSYDMHMNLVLENSEEVMSDGSTRK
CCCCHHHHHHHHHHHHCCCEEEEEECCCEEEEECCCCCCEEEEEEEECCHHHHCCCCCCC
VGTIIIRGDNVILVSPMSP
EEEEEEECCCEEEEECCCC
>Mature Secondary Structure 
GVNLAETAHKVLAESLGSTVLVKLKGDKIVRGTLKSYDMHMNLVLENSEEVMSDGSTRK
CCCHHHHHHHHHHHHCCCEEEEEECCCEEEEECCCCCCEEEEEEEECCHHHHCCCCCCC
VGTIIIRGDNVILVSPMSP
EEEEEEECCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA