Click here to switch to the map view.

The map label for this gene is 15920984

Identifier: 15920984

GI number: 15920984

Start: 733569

End: 734018

Strand: Reverse

Name: 15920984

Synonym: ST0753

Alternate gene names: NA

Gene position: 734018-733569 (Counterclockwise)

Preceding gene: 15920986

Following gene: 15920983

Centisome position: 27.24

GC content: 32.22

Gene sequence:

>450_bases
ATGATAATTGGTTATTTTGACGGTCTATGTGAGCCTAAGAATCCCGGAGGAATAGCAACTTTCGGGTTTGTAATCTATTT
AGATAATAGAAAAATTGAGGGTTATGGACTAGCTGAGAAACCCTTTAGCATTAACTCAACGAATAACGTAGCCGAATATT
CTGGGTTAATATGTCTAATGGAAACAATGTTAAGACTAGGAATTTCATCTCCAATAATTAAAGGAGATTCACAACTAGTA
ATCAAACAGATGAATGGTGAGTACAAAGTTAAAGCTAAAAGAATAATCCCACTTTATGAAAAAGCAATTGAACTAAAGAA
AAAGTTAAATGCCACTCTTATTTGGGTACCTAGAGAAGAAAATAAAGAAGCTGACAGATTAAGTAGAGTAGCTTATGAAT
TAGTAAGAAGAGGAAAGTTAAGAGATATAGGATGTATAATATTAACTTAG

Upstream 100 bases:

>100_bases
CATTTTCTGTTTGACGTTCATTAAATTATTTCTCCTTTTCCTCTATGGTTGTAAATAATGATACAATAAACTAATTTTTA
ACTCTTAACATTACTACTCT

Downstream 100 bases:

>100_bases
TTCAATATTTATAGACAGAACAAAAACTTACAATTTTCTAATAAAGATTAGATTATATAGGTATCATTATCATAAATTTT
TATATGTCTGTGTGTATTTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 149

Protein sequence:

>149_residues
MIIGYFDGLCEPKNPGGIATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRLGISSPIIKGDSQLV
IKQMNGEYKVKAKRIIPLYEKAIELKKKLNATLIWVPREENKEADRLSRVAYELVRRGKLRDIGCIILT

Sequences:

>Translated_149_residues
MIIGYFDGLCEPKNPGGIATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRLGISSPIIKGDSQLV
IKQMNGEYKVKAKRIIPLYEKAIELKKKLNATLIWVPREENKEADRLSRVAYELVRRGKLRDIGCIILT
>Mature_149_residues
MIIGYFDGLCEPKNPGGIATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRLGISSPIIKGDSQLV
IKQMNGEYKVKAKRIIPLYEKAIELKKKLNATLIWVPREENKEADRLSRVAYELVRRGKLRDIGCIILT

Specific function: Unknown

COG id: COG0328

COG function: function code L; Ribonuclease HI

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RNase H domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013078
- InterPro:   IPR012337
- InterPro:   IPR014636
- InterPro:   IPR002156 [H]

Pfam domain/function: PF00300 PGAM; PF00075 RnaseH [H]

EC number: NA

Molecular weight: Translated: 16813; Mature: 16813

Theoretical pI: Translated: 9.56; Mature: 9.56

Prosite motif: PS50879 RNASE_H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIGYFDGLCEPKNPGGIATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLM
CEEECCCCCCCCCCCCCEEEEEEEEEEECCEECCCCCCCCCEECCCCCCHHHHHHHHHHH
ETMLRLGISSPIIKGDSQLVIKQMNGEYKVKAKRIIPLYEKAIELKKKLNATLIWVPREE
HHHHHCCCCCCEEECCCEEEEEECCCCEEEEEEEECHHHHHHHHHHHHCCEEEEEEECCC
NKEADRLSRVAYELVRRGKLRDIGCIILT
CCHHHHHHHHHHHHHHCCCCCCCCEEEEC
>Mature Secondary Structure
MIIGYFDGLCEPKNPGGIATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLM
CEEECCCCCCCCCCCCCEEEEEEEEEEECCEECCCCCCCCCEECCCCCCHHHHHHHHHHH
ETMLRLGISSPIIKGDSQLVIKQMNGEYKVKAKRIIPLYEKAIELKKKLNATLIWVPREE
HHHHHCCCCCCEEECCCEEEEEECCCCEEEEEEEECHHHHHHHHHHHHCCEEEEEEECCC
NKEADRLSRVAYELVRRGKLRDIGCIILT
CCHHHHHHHHHHHHHHCCCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]