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The map label for this gene is rsmB [H]

Identifier: 15920908

GI number: 15920908

Start: 665513

End: 666625

Strand: Direct

Name: rsmB [H]

Synonym: ST0683

Alternate gene names: 15920908

Gene position: 665513-666625 (Clockwise)

Preceding gene: 15920907

Following gene: 15920909

Centisome position: 24.7

GC content: 30.91

Gene sequence:

>1113_bases
ATGAAAAAACACAATGATTTTTCCGATATGAACAGAAAAATAGAAGCTTTTTCTCTTGCTATAGATCTTATCAAGAAAAT
GAAAATTCAGCCTGAAAAAGCATTTGATATTTCTTTTAGAAAACTGAAACTAAAAGATAATAGAGAAACTTTGTATCAGG
AATTTTTGCGAGTGATTAAAAATTATTACTACTATTCAGAGCTATATCCTGATAAAGAAATAGAAGAGATTATTACATAT
TCACTTAAAGAAGACAAGATAGCATTACCACAATGGGTTAAGGAAAGATTGTCCTACATAAAATTGGATGATTTCTCGAA
ACTTTTTCACAAAAAAACCTGGATTAGGGTTAATACTTTAAAAGTTAATGTTAAAGAGGCCATTAGTTCGTTAATGAAAA
AAGGCTTTGAACTAGTAAGAGACGACTTTGACTTTCTATTTCAAGTAACTCGTTTCCCTTTTAGAATATCTAAGACGGAA
GAGTTTCAGAAAGGCGAAATTGTAATACAAGATAAGGCTAGCGTTTATGTTGTTACAGTACTTGATCCTAAACCTTATGA
AAGAATTTTAGAAGTAGGTAGTGCCCCGGGAATGAAGACTTCTTTAATACAACAGTTAACTAATAATAAAGCTTATGTCA
TAGCCCTAGATATTTCTGAAAAAAGGATACAAGTTCAAAGGGAACTAATGGAAAAGATGGGCGTAGAAAATTATGAGCTA
ATCGTGGCTGATGGAGAAAATTTACCAATAAAAGAAGTTGACAAAATCCTTATTGATGCTCCTTGTAGTAACAGTGGTAC
TATAAACGCTGATCCAAGCGTTTTCTTAAGATTAAACAAGAATGATGTGATTAAACTTTCGAGATTACAAAAGGAAATTC
TAAGAGAAGCTTCAAAGTTGCGTAAACCAGTAGTGTACTCAACATGTTCTCTATTCCCAGAAGAAGGAGAAAAAATAGTA
GAGAAATATTCAGATTATTTAGTTAAGCTTACTAATGATCCTACACATTACGGTTATATGAGAAGTAAAGTTTGGTTAAG
GGTAATGAGATTTTATCCTCATATTCATGGTACTGAAGGATTTTTTATATCTAAATTAGATTTTTCTAAATGA

Upstream 100 bases:

>100_bases
AACTATTTTAATCATGTCCTTAATGTTTGCTTCAACATAACTGTCTAGGTTAATCATTACTTACTATAAGACTTTTATGA
AATAACTTTAAAAAGACTAT

Downstream 100 bases:

>100_bases
TGAGGCTTTCAGAATTCTTAAGGGAAAACTCACCTTGGGAGGAATATGTTAACCATGAATTTGTAAAAGAAATGATTGAA
GGGACACTTCCGCAGAAAAA

Product: Sun family protein

Products: NA

Alternate protein names: rRNA (cytosine-C(5)-)-methyltransferase rsmB [H]

Number of amino acids: Translated: 370; Mature: 370

Protein sequence:

>370_residues
MKKHNDFSDMNRKIEAFSLAIDLIKKMKIQPEKAFDISFRKLKLKDNRETLYQEFLRVIKNYYYYSELYPDKEIEEIITY
SLKEDKIALPQWVKERLSYIKLDDFSKLFHKKTWIRVNTLKVNVKEAISSLMKKGFELVRDDFDFLFQVTRFPFRISKTE
EFQKGEIVIQDKASVYVVTVLDPKPYERILEVGSAPGMKTSLIQQLTNNKAYVIALDISEKRIQVQRELMEKMGVENYEL
IVADGENLPIKEVDKILIDAPCSNSGTINADPSVFLRLNKNDVIKLSRLQKEILREASKLRKPVVYSTCSLFPEEGEKIV
EKYSDYLVKLTNDPTHYGYMRSKVWLRVMRFYPHIHGTEGFFISKLDFSK

Sequences:

>Translated_370_residues
MKKHNDFSDMNRKIEAFSLAIDLIKKMKIQPEKAFDISFRKLKLKDNRETLYQEFLRVIKNYYYYSELYPDKEIEEIITY
SLKEDKIALPQWVKERLSYIKLDDFSKLFHKKTWIRVNTLKVNVKEAISSLMKKGFELVRDDFDFLFQVTRFPFRISKTE
EFQKGEIVIQDKASVYVVTVLDPKPYERILEVGSAPGMKTSLIQQLTNNKAYVIALDISEKRIQVQRELMEKMGVENYEL
IVADGENLPIKEVDKILIDAPCSNSGTINADPSVFLRLNKNDVIKLSRLQKEILREASKLRKPVVYSTCSLFPEEGEKIV
EKYSDYLVKLTNDPTHYGYMRSKVWLRVMRFYPHIHGTEGFFISKLDFSK
>Mature_370_residues
MKKHNDFSDMNRKIEAFSLAIDLIKKMKIQPEKAFDISFRKLKLKDNRETLYQEFLRVIKNYYYYSELYPDKEIEEIITY
SLKEDKIALPQWVKERLSYIKLDDFSKLFHKKTWIRVNTLKVNVKEAISSLMKKGFELVRDDFDFLFQVTRFPFRISKTE
EFQKGEIVIQDKASVYVVTVLDPKPYERILEVGSAPGMKTSLIQQLTNNKAYVIALDISEKRIQVQRELMEKMGVENYEL
IVADGENLPIKEVDKILIDAPCSNSGTINADPSVFLRLNKNDVIKLSRLQKEILREASKLRKPVVYSTCSLFPEEGEKIV
EKYSDYLVKLTNDPTHYGYMRSKVWLRVMRFYPHIHGTEGFFISKLDFSK

Specific function: Unknown

COG id: COG0144

COG function: function code J; tRNA and rRNA cytosine-C5-methylases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmB/NOP family [H]

Homologues:

Organism=Homo sapiens, GI76150625, Length=278, Percent_Identity=32.3741007194245, Blast_Score=130, Evalue=1e-30,
Organism=Homo sapiens, GI76150623, Length=278, Percent_Identity=32.3741007194245, Blast_Score=130, Evalue=1e-30,
Organism=Homo sapiens, GI270288818, Length=297, Percent_Identity=26.5993265993266, Blast_Score=86, Evalue=6e-17,
Organism=Homo sapiens, GI8922322, Length=241, Percent_Identity=29.045643153527, Blast_Score=86, Evalue=8e-17,
Organism=Homo sapiens, GI270288816, Length=240, Percent_Identity=28.75, Blast_Score=86, Evalue=8e-17,
Organism=Homo sapiens, GI23199998, Length=296, Percent_Identity=26.3513513513513, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI32698918, Length=173, Percent_Identity=30.0578034682081, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI39995082, Length=188, Percent_Identity=29.2553191489362, Blast_Score=70, Evalue=4e-12,
Organism=Homo sapiens, GI301336155, Length=188, Percent_Identity=29.2553191489362, Blast_Score=70, Evalue=4e-12,
Organism=Escherichia coli, GI87081985, Length=295, Percent_Identity=28.135593220339, Blast_Score=113, Evalue=3e-26,
Organism=Escherichia coli, GI2367212, Length=314, Percent_Identity=24.8407643312102, Blast_Score=92, Evalue=6e-20,
Organism=Caenorhabditis elegans, GI17536757, Length=274, Percent_Identity=29.9270072992701, Blast_Score=108, Evalue=4e-24,
Organism=Caenorhabditis elegans, GI71998419, Length=301, Percent_Identity=27.5747508305648, Blast_Score=92, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI115534021, Length=215, Percent_Identity=30.2325581395349, Blast_Score=91, Evalue=8e-19,
Organism=Saccharomyces cerevisiae, GI6324268, Length=278, Percent_Identity=31.6546762589928, Blast_Score=121, Evalue=2e-28,
Organism=Saccharomyces cerevisiae, GI6319447, Length=282, Percent_Identity=26.9503546099291, Blast_Score=81, Evalue=3e-16,
Organism=Drosophila melanogaster, GI22024126, Length=280, Percent_Identity=31.0714285714286, Blast_Score=114, Evalue=1e-25,
Organism=Drosophila melanogaster, GI24668781, Length=233, Percent_Identity=30.9012875536481, Blast_Score=90, Evalue=3e-18,
Organism=Drosophila melanogaster, GI21356513, Length=233, Percent_Identity=30.9012875536481, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI21355201, Length=186, Percent_Identity=30.6451612903226, Blast_Score=76, Evalue=4e-14,
Organism=Drosophila melanogaster, GI21356579, Length=166, Percent_Identity=30.7228915662651, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI19920494, Length=167, Percent_Identity=29.940119760479, Blast_Score=67, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001678
- InterPro:   IPR018314
- InterPro:   IPR006027
- InterPro:   IPR004573 [H]

Pfam domain/function: PF01189 Nol1_Nop2_Fmu; PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 43571; Mature: 43571

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKHNDFSDMNRKIEAFSLAIDLIKKMKIQPEKAFDISFRKLKLKDNRETLYQEFLRVIK
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCEEEEEEECCCHHHHHHHHHHHHH
NYYYYSELYPDKEIEEIITYSLKEDKIALPQWVKERLSYIKLDDFSKLFHKKTWIRVNTL
HHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHEECCHHHHHHHHHHHEEEEEEE
KVNVKEAISSLMKKGFELVRDDFDFLFQVTRFPFRISKTEEFQKGEIVIQDKASVYVVTV
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCEEEEECCCEEEEEE
LDPKPYERILEVGSAPGMKTSLIQQLTNNKAYVIALDISEKRIQVQRELMEKMGVENYEL
ECCCHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHCCCCCEEE
IVADGENLPIKEVDKILIDAPCSNSGTINADPSVFLRLNKNDVIKLSRLQKEILREASKL
EEECCCCCCHHHHHHHEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHH
RKPVVYSTCSLFPEEGEKIVEKYSDYLVKLTNDPTHYGYMRSKVWLRVMRFYPHIHGTEG
CCCHHHHHHHCCCHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
FFISKLDFSK
EEEECCCCCC
>Mature Secondary Structure
MKKHNDFSDMNRKIEAFSLAIDLIKKMKIQPEKAFDISFRKLKLKDNRETLYQEFLRVIK
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCEEEEEEECCCHHHHHHHHHHHHH
NYYYYSELYPDKEIEEIITYSLKEDKIALPQWVKERLSYIKLDDFSKLFHKKTWIRVNTL
HHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHEECCHHHHHHHHHHHEEEEEEE
KVNVKEAISSLMKKGFELVRDDFDFLFQVTRFPFRISKTEEFQKGEIVIQDKASVYVVTV
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCEEEEECCCEEEEEE
LDPKPYERILEVGSAPGMKTSLIQQLTNNKAYVIALDISEKRIQVQRELMEKMGVENYEL
ECCCHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHCCCCCEEE
IVADGENLPIKEVDKILIDAPCSNSGTINADPSVFLRLNKNDVIKLSRLQKEILREASKL
EEECCCCCCHHHHHHHEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHH
RKPVVYSTCSLFPEEGEKIVEKYSDYLVKLTNDPTHYGYMRSKVWLRVMRFYPHIHGTEG
CCCHHHHHHHCCCHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
FFISKLDFSK
EEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9534248; 9384377; 9086272 [H]