Click here to switch to the map view.

The map label for this gene is 15920728

Identifier: 15920728

GI number: 15920728

Start: 509070

End: 509615

Strand: Reverse

Name: 15920728

Synonym: ST0512

Alternate gene names: NA

Gene position: 509615-509070 (Counterclockwise)

Preceding gene: 15920729

Following gene: 15920725

Centisome position: 18.91

GC content: 29.3

Gene sequence:

>546_bases
ATGTATATTACTGTACCAGATGACAAAATTAATTTAGTAAAATCAATACTAGGAAGACTAGAAGAAATCAGCAATACTAA
GATAGAATTTGATGAAAAAACTAAATCTATAAGAGTAATTCCAAAAGATAATAATGCTTATGAGGCTATGAAAGTTGTCT
CAGTTATAAAAGCTATTGGCGTCGGTTTTGATGTTGATGAGGCTATGAAACTTATGAGAGATGATTATGTTCTAGATATT
ATTGATTTGAAAGATTCTACTAATGGACCAGAAGATATGAAGAGGATTAAAGGAAGAATAATTGGTGAAAAAGGAAAAAC
TAAGAAAATAATCCAAGAATATACTGGAGTAAATATAATTATTACTGATCACTATGTGGGAATATTAGGTACTATTGAAC
AAGCAGATATAGCAAAAAGAGCCATAGAGATGCTAATTAAAGGAAAAGAACATTCTACTGTATATAAATACCTAGACAAG
GCTGAAAGAGAATTATCGCTATTTAATGTTAACAGAGCTTTAAAAGAGGGACTCGATAATACTTAA

Upstream 100 bases:

>100_bases
AGAATTTAAATACATTCTTTGAAAGTAAGGGAATTGAGATTATTGAGACTGAGGAAATATTAAGGAGATTTAAGATATAT
GAAAATGAGGACCAAAATTG

Downstream 100 bases:

>100_bases
ACTTTCTTCACTGTATCTGCTAGTATACGTCTTTATTATTCTCTCGTAACCTAACAAAATTTCTCTAGTTTTAGAATTAT
TGAGAAGCATTTTAAGATTC

Product: putative RNA-processing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MYITVPDDKINLVKSILGRLEEISNTKIEFDEKTKSIRVIPKDNNAYEAMKVVSVIKAIGVGFDVDEAMKLMRDDYVLDI
IDLKDSTNGPEDMKRIKGRIIGEKGKTKKIIQEYTGVNIIITDHYVGILGTIEQADIAKRAIEMLIKGKEHSTVYKYLDK
AERELSLFNVNRALKEGLDNT

Sequences:

>Translated_181_residues
MYITVPDDKINLVKSILGRLEEISNTKIEFDEKTKSIRVIPKDNNAYEAMKVVSVIKAIGVGFDVDEAMKLMRDDYVLDI
IDLKDSTNGPEDMKRIKGRIIGEKGKTKKIIQEYTGVNIIITDHYVGILGTIEQADIAKRAIEMLIKGKEHSTVYKYLDK
AERELSLFNVNRALKEGLDNT
>Mature_181_residues
MYITVPDDKINLVKSILGRLEEISNTKIEFDEKTKSIRVIPKDNNAYEAMKVVSVIKAIGVGFDVDEAMKLMRDDYVLDI
IDLKDSTNGPEDMKRIKGRIIGEKGKTKKIIQEYTGVNIIITDHYVGILGTIEQADIAKRAIEMLIKGKEHSTVYKYLDK
AERELSLFNVNRALKEGLDNT

Specific function: Unknown

COG id: COG1094

COG function: function code R; Predicted RNA-binding protein (contains KH domains)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 KH domains [H]

Homologues:

Organism=Caenorhabditis elegans, GI17537417, Length=163, Percent_Identity=27.6073619631902, Blast_Score=65, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6324720, Length=165, Percent_Identity=31.5151515151515, Blast_Score=63, Evalue=3e-11,
Organism=Drosophila melanogaster, GI20129085, Length=172, Percent_Identity=28.4883720930233, Blast_Score=68, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004087
- InterPro:   IPR019964
- InterPro:   IPR004088
- InterPro:   IPR018111 [H]

Pfam domain/function: PF00013 KH_1 [H]

EC number: NA

Molecular weight: Translated: 20506; Mature: 20506

Theoretical pI: Translated: 6.56; Mature: 6.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYITVPDDKINLVKSILGRLEEISNTKIEFDEKTKSIRVIPKDNNAYEAMKVVSVIKAIG
CEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHC
VGFDVDEAMKLMRDDYVLDIIDLKDSTNGPEDMKRIKGRIIGEKGKTKKIIQEYTGVNII
CCCCHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCEEE
ITDHYVGILGTIEQADIAKRAIEMLIKGKEHSTVYKYLDKAERELSLFNVNRALKEGLDN
EECCHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T
C
>Mature Secondary Structure
MYITVPDDKINLVKSILGRLEEISNTKIEFDEKTKSIRVIPKDNNAYEAMKVVSVIKAIG
CEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHC
VGFDVDEAMKLMRDDYVLDIIDLKDSTNGPEDMKRIKGRIIGEKGKTKKIIQEYTGVNII
CCCCHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCEEE
ITDHYVGILGTIEQADIAKRAIEMLIKGKEHSTVYKYLDKAERELSLFNVNRALKEGLDN
EECCHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]