Click here to switch to the map view.

The map label for this gene is asnC [C]

Identifier: 15920704

GI number: 15920704

Start: 487989

End: 488444

Strand: Reverse

Name: asnC [C]

Synonym: ST0489

Alternate gene names: 15920704

Gene position: 488444-487989 (Counterclockwise)

Preceding gene: 15920705

Following gene: 15920699

Centisome position: 18.13

GC content: 27.63

Gene sequence:

>456_bases
ATGACATATTTCCTTGATGATATAGATAAAAAAATCTTAAAAATTCTTCAAGAAGATGCTAGGACGCCTTTTTCTAAGAT
CGCTAAAATGCTTAATCTAAGTGAGTCTACAATACATATTAGAATTAAGAGATTAAGGGAAAATGGTATAATAAAAGGAT
TTTATGTAGATGTTGACCCAGAAAAAATAGGTTACAATGTTGTAGCTTTTGTATTAATTAAGGCAGATCCAAAAAAATAC
GAACAAATATTGAAAAAGATATATGAGTTCAAGGAAGTATATGAAATATTTGACGTGACTGGTGAATATTATGCATTATT
AAAAGTTAGAGTAAAAAGCAGAGAAGAACTTGCAACAATATTGGATAAAATAGGTAATATGGATGGAGTAACCTCAACTT
ATACCATGTTTGTATTAAGAACAATTAAAGAAATGAAGACAATAGACTTTACTTAA

Upstream 100 bases:

>100_bases
CTAGAATTATGACAAAAAGTGATCCTAATCTAGTCTTAAAAGTTGCTATCGGTGACTTCGATTCATTTGATATTATTAAG
TTATTTGGGAGGATGATTAT

Downstream 100 bases:

>100_bases
TCCGTGCGAAAGCTCTTCATCATGTTTTCAGCCGGTTTATTATTCTTCATTTCCTAATTTTTTTAATGAGATATTCAATT
ATATATTTTGCAGGATTAAT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 151; Mature: 150

Protein sequence:

>151_residues
MTYFLDDIDKKILKILQEDARTPFSKIAKMLNLSESTIHIRIKRLRENGIIKGFYVDVDPEKIGYNVVAFVLIKADPKKY
EQILKKIYEFKEVYEIFDVTGEYYALLKVRVKSREELATILDKIGNMDGVTSTYTMFVLRTIKEMKTIDFT

Sequences:

>Translated_151_residues
MTYFLDDIDKKILKILQEDARTPFSKIAKMLNLSESTIHIRIKRLRENGIIKGFYVDVDPEKIGYNVVAFVLIKADPKKY
EQILKKIYEFKEVYEIFDVTGEYYALLKVRVKSREELATILDKIGNMDGVTSTYTMFVLRTIKEMKTIDFT
>Mature_150_residues
TYFLDDIDKKILKILQEDARTPFSKIAKMLNLSESTIHIRIKRLRENGIIKGFYVDVDPEKIGYNVVAFVLIKADPKKYE
QILKKIYEFKEVYEIFDVTGEYYALLKVRVKSREELATILDKIGNMDGVTSTYTMFVLRTIKEMKTIDFT

Specific function: Activator Of Asna Transcription; Autogenous Regulator Of Its Own Transcription; And Repressor Of The Expression Of Gida At A Post-Transcriptional Level. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790182, Length=149, Percent_Identity=36.9127516778523, Blast_Score=101, Evalue=2e-23,
Organism=Escherichia coli, GI87081742, Length=140, Percent_Identity=32.8571428571429, Blast_Score=79, Evalue=1e-16,
Organism=Escherichia coli, GI1787116, Length=144, Percent_Identity=29.1666666666667, Blast_Score=66, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 17720; Mature: 17589

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYFLDDIDKKILKILQEDARTPFSKIAKMLNLSESTIHIRIKRLRENGIIKGFYVDVDP
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEEEECH
EKIGYNVVAFVLIKADPKKYEQILKKIYEFKEVYEIFDVTGEYYALLKVRVKSREELATI
HHHCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
LDKIGNMDGVTSTYTMFVLRTIKEMKTIDFT
HHHHCCCCCCHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TYFLDDIDKKILKILQEDARTPFSKIAKMLNLSESTIHIRIKRLRENGIIKGFYVDVDP
CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEEEECH
EKIGYNVVAFVLIKADPKKYEQILKKIYEFKEVYEIFDVTGEYYALLKVRVKSREELATI
HHHCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
LDKIGNMDGVTSTYTMFVLRTIKEMKTIDFT
HHHHCCCCCCHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA