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The map label for this gene is 15920652

Identifier: 15920652

GI number: 15920652

Start: 448538

End: 449089

Strand: Reverse

Name: 15920652

Synonym: ST0441

Alternate gene names: NA

Gene position: 449089-448538 (Counterclockwise)

Preceding gene: 15920653

Following gene: 297616203

Centisome position: 16.67

GC content: 26.45

Gene sequence:

>552_bases
GTGGTGCTAAGTGGGCAGGTCTTGCTTATACACCGTATTGAAATAGTTTTTACTTCAAGTCGTGACGCTCCATTAAGAGT
AAGAACTTTTTTAAATGAGTTGACTTATGTTTTTCCTAATTCCATAAAGATTAATAGAGGTAGACAAAGTCTTAAAGATA
TTATAGCTAAATCAATTTATTTAAACTCAAAATATCTAGTTATAATCGATGTCATAAAGGGAAACCCAGGTAGATTTAGA
GTATACGACCTTACATCAAAAATGCTTAAATATAACTTTATAATTTATGGTGTAACATTACTTACAGAATTAAAATTACA
TAGAACATTAATCAAAAGAGGATGTATAGGAAAAATTGAAGATCAGAAAATAAAAAATATGTTAATTGATCTAGGTTACA
TATATATTGAAAATTGCGATGTATATGCTAATGGAGATTACATAATAAAAGACAATAATTATGTATTTGAACTGAAATTC
ACGAAAGATGATAAAATATTAGGACCTGTCATTAGATTTCAGCTATATGATAGAAATAAAAATATTAATTAA

Upstream 100 bases:

>100_bases
GAGATAATGGAAAAACGGTATCAAGATCATCAATGTCCCGTATGTAAAACAACCGGAAAAGTGGTTAGAATAGCTTCTGG
GGTATGGTATTGTAAAAAGT

Downstream 100 bases:

>100_bases
CTCTACTGAAGAAGAAAGACAGCTTATATTTAATTCTGTATTACCAGAGGGTATAGACACTAAGTATATCAGAATAGATA
GAGAGAACTCGGAAATTATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 183; Mature: 183

Protein sequence:

>183_residues
MVLSGQVLLIHRIEIVFTSSRDAPLRVRTFLNELTYVFPNSIKINRGRQSLKDIIAKSIYLNSKYLVIIDVIKGNPGRFR
VYDLTSKMLKYNFIIYGVTLLTELKLHRTLIKRGCIGKIEDQKIKNMLIDLGYIYIENCDVYANGDYIIKDNNYVFELKF
TKDDKILGPVIRFQLYDRNKNIN

Sequences:

>Translated_183_residues
MVLSGQVLLIHRIEIVFTSSRDAPLRVRTFLNELTYVFPNSIKINRGRQSLKDIIAKSIYLNSKYLVIIDVIKGNPGRFR
VYDLTSKMLKYNFIIYGVTLLTELKLHRTLIKRGCIGKIEDQKIKNMLIDLGYIYIENCDVYANGDYIIKDNNYVFELKF
TKDDKILGPVIRFQLYDRNKNIN
>Mature_183_residues
MVLSGQVLLIHRIEIVFTSSRDAPLRVRTFLNELTYVFPNSIKINRGRQSLKDIIAKSIYLNSKYLVIIDVIKGNPGRFR
VYDLTSKMLKYNFIIYGVTLLTELKLHRTLIKRGCIGKIEDQKIKNMLIDLGYIYIENCDVYANGDYIIKDNNYVFELKF
TKDDKILGPVIRFQLYDRNKNIN

Specific function: Probably involved in the biogenesis of the ribosome

COG id: COG2136

COG function: function code JA; Predicted exosome subunit/U3 small nucleolar ribonucleoprotein (snoRNP) component, contains IMP4 domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Brix domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): BRIX_SULTO (Q975H1)

Other databases:

- EMBL:   BA000023
- RefSeq:   NP_376321.1
- ProteinModelPortal:   Q975H1
- GeneID:   1458377
- GenomeReviews:   BA000023_GR
- KEGG:   sto:ST0441
- NMPDR:   fig|273063.1.peg.489
- HOGENOM:   HBG704951
- OMA:   NNCEVIV
- ProtClustDB:   CLSK802846
- BioCyc:   STOK273063:ST0441-MONOMER
- GO:   GO:0006412
- HAMAP:   MF_00699
- InterPro:   IPR004154
- InterPro:   IPR007109
- SMART:   SM00879

Pfam domain/function: PF04427 Brix; SSF52954 Anticodon_bd

EC number: NA

Molecular weight: Translated: 21420; Mature: 21420

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: PS50833 BRIX

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLSGQVLLIHRIEIVFTSSRDAPLRVRTFLNELTYVFPNSIKINRGRQSLKDIIAKSIY
CEECCCEEEEEEEEEEEECCCCCCCHHHHHHHHHHEECCCCEEEECCHHHHHHHHHHHEE
LNSKYLVIIDVIKGNPGRFRVYDLTSKMLKYNFIIYGVTLLTELKLHRTLIKRGCIGKIE
ECCCEEEEEEEEECCCCEEEEEECHHHHHHHHHEEEHHHHHHHHHHHHHHHHCCCCCCCC
DQKIKNMLIDLGYIYIENCDVYANGDYIIKDNNYVFELKFTKDDKILGPVIRFQLYDRNK
HHHHHHHHHEEEEEEEECCEEEECCCEEEECCCEEEEEEECCCCCCCCCEEEEEEEECCC
NIN
CCC
>Mature Secondary Structure
MVLSGQVLLIHRIEIVFTSSRDAPLRVRTFLNELTYVFPNSIKINRGRQSLKDIIAKSIY
CEECCCEEEEEEEEEEEECCCCCCCHHHHHHHHHHEECCCCEEEECCHHHHHHHHHHHEE
LNSKYLVIIDVIKGNPGRFRVYDLTSKMLKYNFIIYGVTLLTELKLHRTLIKRGCIGKIE
ECCCEEEEEEEEECCCCEEEEEECHHHHHHHHHEEEHHHHHHHHHHHHHHHHCCCCCCCC
DQKIKNMLIDLGYIYIENCDVYANGDYIIKDNNYVFELKFTKDDKILGPVIRFQLYDRNK
HHHHHHHHHEEEEEEEECCEEEECCCEEEECCCEEEEEEECCCCCCCCCEEEEEEEECCC
NIN
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11572479