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The map label for this gene is rps17p

Identifier: 15920633

GI number: 15920633

Start: 430925

End: 431275

Strand: Reverse

Name: rps17p

Synonym: ST0423

Alternate gene names: 15920633

Gene position: 431275-430925 (Counterclockwise)

Preceding gene: 15920634

Following gene: 15920632

Centisome position: 16.0

GC content: 32.76

Gene sequence:

>351_bases
GTGGTTATAATGGGTAAAAAAGGTGCCTTAGTAAAAAATATAGGAATTGAAGGAGTAAATCCACCCTCTAAAACTTGTGA
TGATATAAATTGTCCATTTCATGGAAACCTAAGAGTGAGAGGAATAATACTAGAAGGAAGACTAATAAGATATAGAGCTG
AAAAAACGGGTGTAGTAGAAAGAGATTATTTATTCTATGATACAAAGTATAAGAGATATGAAAGAAGAAGAAGCAGAATC
CATGTTCACATACCTCCATGTTTAGATGTCAAAGAAGGAGATAACGTTATAATTGCTGAATGTAGACCTATAGCTAAATC
AGTTTCATTTGTGGTTATAGGTAAGAGGTGA

Upstream 100 bases:

>100_bases
TAATTCGTGTATTAAAAAGTAATGGAATTTTCGAAATATATTCTGAAAATAGGAAAGTCATTTTACCTGGTTCTAAACTT
GTTGGTAGAATAGAAAAAAG

Downstream 100 bases:

>100_bases
ATAAGATGCCCGAAAAACTCCAGGTTTTAGGTAGTAGAAAAGGACTTACACCCGGATTACAACATTATACTACAGTAACT
GTTGCAGATAATAGTGGTGC

Product: 30S ribosomal protein S17P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 116; Mature: 116

Protein sequence:

>116_residues
MVIMGKKGALVKNIGIEGVNPPSKTCDDINCPFHGNLRVRGIILEGRLIRYRAEKTGVVERDYLFYDTKYKRYERRRSRI
HVHIPPCLDVKEGDNVIIAECRPIAKSVSFVVIGKR

Sequences:

>Translated_116_residues
MVIMGKKGALVKNIGIEGVNPPSKTCDDINCPFHGNLRVRGIILEGRLIRYRAEKTGVVERDYLFYDTKYKRYERRRSRI
HVHIPPCLDVKEGDNVIIAECRPIAKSVSFVVIGKR
>Mature_116_residues
MVIMGKKGALVKNIGIEGVNPPSKTCDDINCPFHGNLRVRGIILEGRLIRYRAEKTGVVERDYLFYDTKYKRYERRRSRI
HVHIPPCLDVKEGDNVIIAECRPIAKSVSFVVIGKR

Specific function: One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA

COG id: COG0186

COG function: function code J; Ribosomal protein S17

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S17P family

Homologues:

Organism=Homo sapiens, GI4506681, Length=122, Percent_Identity=40.1639344262295, Blast_Score=91, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17542016, Length=87, Percent_Identity=44.8275862068966, Blast_Score=82, Evalue=6e-17,
Organism=Saccharomyces cerevisiae, GI6320228, Length=106, Percent_Identity=39.622641509434, Blast_Score=81, Evalue=3e-17,
Organism=Saccharomyces cerevisiae, GI6319522, Length=106, Percent_Identity=39.622641509434, Blast_Score=81, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24652924, Length=115, Percent_Identity=38.2608695652174, Blast_Score=82, Evalue=7e-17,
Organism=Drosophila melanogaster, GI24652922, Length=107, Percent_Identity=39.2523364485981, Blast_Score=80, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RS17_SULTO (Q975I9)

Other databases:

- EMBL:   BA000023
- RefSeq:   NP_376302.1
- ProteinModelPortal:   Q975I9
- SMR:   Q975I9
- GeneID:   1458358
- GenomeReviews:   BA000023_GR
- KEGG:   sto:ST0423
- NMPDR:   fig|273063.1.peg.470
- HOGENOM:   HBG750455
- OMA:   KYNRYER
- ProtClustDB:   PRK08572
- BioCyc:   STOK273063:ST0423-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01345_A
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000266
- InterPro:   IPR019978
- Gene3D:   G3DSA:2.40.50.140
- PANTHER:   PTHR10744
- PANTHER:   PTHR10744:SF3
- PRINTS:   PR00973
- ProDom:   PD001295
- TIGRFAMs:   TIGR03630

Pfam domain/function: PF00366 Ribosomal_S17; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 13268; Mature: 13268

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: PS00056 RIBOSOMAL_S17

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVIMGKKGALVKNIGIEGVNPPSKTCDDINCPFHGNLRVRGIILEGRLIRYRAEKTGVVE
CEEECCCCCEEEECCCCCCCCCCCCCCCCCCCEECCEEEEEEEECCEEEEEECCCCCCEE
RDYLFYDTKYKRYERRRSRIHVHIPPCLDVKEGDNVIIAECRPIAKSVSFVVIGKR
CCEEEECCHHHHHHHHHCEEEEECCCCCCCCCCCCEEEEECCCCCCCEEEEEEECC
>Mature Secondary Structure
MVIMGKKGALVKNIGIEGVNPPSKTCDDINCPFHGNLRVRGIILEGRLIRYRAEKTGVVE
CEEECCCCCEEEECCCCCCCCCCCCCCCCCCCEECCEEEEEEEECCEEEEEECCCCCCEE
RDYLFYDTKYKRYERRRSRIHVHIPPCLDVKEGDNVIIAECRPIAKSVSFVVIGKR
CCEEEECCHHHHHHHHHCEEEEECCCCCCCCCCCCEEEEECCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11572479