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The map label for this gene is rpoE [H]

Identifier: 15920582

GI number: 15920582

Start: 396196

End: 396747

Strand: Reverse

Name: rpoE [H]

Synonym: ST0379

Alternate gene names: 15920582

Gene position: 396747-396196 (Counterclockwise)

Preceding gene: 15920583

Following gene: 15920581

Centisome position: 14.72

GC content: 32.97

Gene sequence:

>552_bases
ATGTTTAAACTAATTAAAGCAAAGGGTATAATACGCATTCCTCCTGAGTATTTTGGGCAACCACTAGATGAAATAGCACT
ACAAATTTTAAGGCAAGAATATCAAGAAAAAATGATTAAAGACCTTGGTTTAGTCCTCGCTGTACTAGACGCTAAAGTAA
GTGAAGAAGGATATATTATATTCGGAGATGGTGCAACGTATCATGAAGTTAGTTTTGAAATGCTAGCTTTTGTTCCAATA
ATTCAAGAAGTTGTAGAAGGTGAAGTTAATCAAGTAGATAATTATGGGGTTTATGTAAATATAGGACCAGTTGATGGATT
AGCACACATTTCACAAATCACTGATGATAATCTTAAATTTGATCAAAATAGGGGAATTCTTATAGGAGAAAGGAGCAAAA
AAATAATACAAAAAGGGGATAGAGTTAGAGCAAGGATTATTAGTGTATCTACAAGTGGTGGAAGAATGCCTAGAATAGCT
TTAACGATGAAACAACCGTATTTGGGAAAAATTGAATGGATATCACAAGAGTTAACAAAGGCGAGTAAATAA

Upstream 100 bases:

>100_bases
GACTTAGACATAAAGCTAAGCTTAAAGGGGTAAGAGTTATTTATCTAAGACAGAAGAGTAAAAATATAAAGGTAGACATC
ATTATCTAGTCTGATATTTT

Downstream 100 bases:

>100_bases
TGCCCGGAAAAAATAAAGAATTTAAAGCTTGTAAGAATTGCAGAGCATTAGTACCACAAGATACACCTAAATGCCCAGTT
TGTGGATCAATTAGCTTCAG

Product: DNA-directed RNA polymerase subunit E'

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 183; Mature: 183

Protein sequence:

>183_residues
MFKLIKAKGIIRIPPEYFGQPLDEIALQILRQEYQEKMIKDLGLVLAVLDAKVSEEGYIIFGDGATYHEVSFEMLAFVPI
IQEVVEGEVNQVDNYGVYVNIGPVDGLAHISQITDDNLKFDQNRGILIGERSKKIIQKGDRVRARIISVSTSGGRMPRIA
LTMKQPYLGKIEWISQELTKASK

Sequences:

>Translated_183_residues
MFKLIKAKGIIRIPPEYFGQPLDEIALQILRQEYQEKMIKDLGLVLAVLDAKVSEEGYIIFGDGATYHEVSFEMLAFVPI
IQEVVEGEVNQVDNYGVYVNIGPVDGLAHISQITDDNLKFDQNRGILIGERSKKIIQKGDRVRARIISVSTSGGRMPRIA
LTMKQPYLGKIEWISQELTKASK
>Mature_183_residues
MFKLIKAKGIIRIPPEYFGQPLDEIALQILRQEYQEKMIKDLGLVLAVLDAKVSEEGYIIFGDGATYHEVSFEMLAFVPI
IQEVVEGEVNQVDNYGVYVNIGPVDGLAHISQITDDNLKFDQNRGILIGERSKKIIQKGDRVRARIISVSTSGGRMPRIA
LTMKQPYLGKIEWISQELTKASK

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates [H]

COG id: COG1095

COG function: function code K; DNA-directed RNA polymerase, subunit E'

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI24475814, Length=203, Percent_Identity=22.1674876847291, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI65301161, Length=203, Percent_Identity=22.1674876847291, Blast_Score=74, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6322705, Length=101, Percent_Identity=30.6930693069307, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR022967
- InterPro:   IPR005576
- InterPro:   IPR004519 [H]

Pfam domain/function: PF03876 RNA_pol_Rpb7_N; PF00575 S1 [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 20579; Mature: 20579

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKLIKAKGIIRIPPEYFGQPLDEIALQILRQEYQEKMIKDLGLVLAVLDAKVSEEGYII
CCEEEECCCEEECCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
FGDGATYHEVSFEMLAFVPIIQEVVEGEVNQVDNYGVYVNIGPVDGLAHISQITDDNLKF
ECCCCCCHHHHHHHHHHHHHHHHHHCCHHHCCCCCEEEEEECCCCHHHHHHHHCCCCCEE
DQNRGILIGERSKKIIQKGDRVRARIISVSTSGGRMPRIALTMKQPYLGKIEWISQELTK
ECCCCEEEECCHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHHH
ASK
CCC
>Mature Secondary Structure
MFKLIKAKGIIRIPPEYFGQPLDEIALQILRQEYQEKMIKDLGLVLAVLDAKVSEEGYII
CCEEEECCCEEECCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
FGDGATYHEVSFEMLAFVPIIQEVVEGEVNQVDNYGVYVNIGPVDGLAHISQITDDNLKF
ECCCCCCHHHHHHHHHHHHHHHHHHCCHHHCCCCCEEEEEECCCCHHHHHHHHCCCCCEE
DQNRGILIGERSKKIIQKGDRVRARIISVSTSGGRMPRIALTMKQPYLGKIEWISQELTK
ECCCCEEEECCHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHHH
ASK
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8127719 [H]