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The map label for this gene is nirD [H]

Identifier: 15920485

GI number: 15920485

Start: 312827

End: 313792

Strand: Direct

Name: nirD [H]

Synonym: ST0293

Alternate gene names: 15920485

Gene position: 312827-313792 (Clockwise)

Preceding gene: 15920484

Following gene: 15920492

Centisome position: 11.61

GC content: 29.5

Gene sequence:

>966_bases
ATGGAGCTATCAGAAATCGATAAGAAGCTTATAATGGAGCTTGAATATCATTTTCCCTTTAATGAGAAACCTTTTAGTGA
AATCTCAGAAAGGCTTGGAATTTCTGAAGAAGAGATTATAAAGAAAACTAAGGAATTACTGAGTAATGAGATTATAAAAA
GAGTAGGGATGTATGTAAACTTTAGAGCTAAAGGAATGGAAGGGGCTCTAATAGCTGCTGAGATACCAATAGAAAATTTG
GAAAAATATAGAAAAATTACATTAGCTATAAAAGAACTTACTCATAATTATATTAGAAACCATCCAAAATATAATGTTTG
GTTTGTATTAAAAGCTGAAAGCAAAGATAAATTGAAAGAAAATGTGAAAAAGATTTTAGAAGAAAGTAATGGTAGAGATT
ATGTGATTCTGTTCTCTAAAAAAACTCTTAAACTTAGCGTAAAATATGATATAATAAGAGGTGTTTCATATAGCGAACCA
GAAGAAATTCACGAAAAAATACCTACAGCTGAAGAATTAGGTATTCCGAAAGAGTTATTGAAAGACCTTTCACTTCCATT
ACAGATTACTTCAAGACCGTTCAGAAATATAGCCGAAAAATATAATATGAAAGAGAGTGAATTAGTAGAACTAATAAAAG
AACTTAAAGAAAAAGGAGTTATTAAAGATTATGGAGCAACAGTAAATGGCGATAAAGTAGGAATTAAAGAGAATGCCATG
ATGCTAGTTAATTCAGATGATATAGAATCCTCTTGTTACAACTTAGCTAAAAATCTAAAGGAAGCTACACATGTTGTATT
AAGAGAATCGGATAAAAAATGGGACTATTTATGCTATGCTATGATCCATGGAGCAAATAAAAAAATAATATTTGAAGTTG
CAAAAAAAGGAGTCGAAATTACTAAAGCCAAGAGTTATATGCTACTATTTAGCTTAGATAATTTGAAACCTGGTATTGTA
ATTTAG

Upstream 100 bases:

>100_bases
TAGCTGCAGCAACTGGAATATTAGCTGCAAGAGGAATTGCAATTAAATTAGGTCTTTTATAAATAGTACTTTTTTAGCTT
TTAGTATAATTATTTATCAT

Downstream 100 bases:

>100_bases
TAAAACTACCTTTTATTTTTAACATAGATGTTATATTTCTAATTTCTTCTAATGTTGCTTTTACTTTATTGTCTTTTATA
TTTCCTTCAAATTCCAGGTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MELSEIDKKLIMELEYHFPFNEKPFSEISERLGISEEEIIKKTKELLSNEIIKRVGMYVNFRAKGMEGALIAAEIPIENL
EKYRKITLAIKELTHNYIRNHPKYNVWFVLKAESKDKLKENVKKILEESNGRDYVILFSKKTLKLSVKYDIIRGVSYSEP
EEIHEKIPTAEELGIPKELLKDLSLPLQITSRPFRNIAEKYNMKESELVELIKELKEKGVIKDYGATVNGDKVGIKENAM
MLVNSDDIESSCYNLAKNLKEATHVVLRESDKKWDYLCYAMIHGANKKIIFEVAKKGVEITKAKSYMLLFSLDNLKPGIV
I

Sequences:

>Translated_321_residues
MELSEIDKKLIMELEYHFPFNEKPFSEISERLGISEEEIIKKTKELLSNEIIKRVGMYVNFRAKGMEGALIAAEIPIENL
EKYRKITLAIKELTHNYIRNHPKYNVWFVLKAESKDKLKENVKKILEESNGRDYVILFSKKTLKLSVKYDIIRGVSYSEP
EEIHEKIPTAEELGIPKELLKDLSLPLQITSRPFRNIAEKYNMKESELVELIKELKEKGVIKDYGATVNGDKVGIKENAM
MLVNSDDIESSCYNLAKNLKEATHVVLRESDKKWDYLCYAMIHGANKKIIFEVAKKGVEITKAKSYMLLFSLDNLKPGIV
I
>Mature_321_residues
MELSEIDKKLIMELEYHFPFNEKPFSEISERLGISEEEIIKKTKELLSNEIIKRVGMYVNFRAKGMEGALIAAEIPIENL
EKYRKITLAIKELTHNYIRNHPKYNVWFVLKAESKDKLKENVKKILEESNGRDYVILFSKKTLKLSVKYDIIRGVSYSEP
EEIHEKIPTAEELGIPKELLKDLSLPLQITSRPFRNIAEKYNMKESELVELIKELKEKGVIKDYGATVNGDKVGIKENAM
MLVNSDDIESSCYNLAKNLKEATHVVLRESDKKWDYLCYAMIHGANKKIIFEVAKKGVEITKAKSYMLLFSLDNLKPGIV
I

Specific function: Required for the biosynthesis of heme D1 of nitrite reductase [H]

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011991 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37064; Mature: 37064

Theoretical pI: Translated: 8.52; Mature: 8.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELSEIDKKLIMELEYHFPFNEKPFSEISERLGISEEEIIKKTKELLSNEIIKRVGMYVN
CCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCEEE
FRAKGMEGALIAAEIPIENLEKYRKITLAIKELTHNYIRNHPKYNVWFVLKAESKDKLKE
EEECCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHH
NVKKILEESNGRDYVILFSKKTLKLSVKYDIIRGVSYSEPEEIHEKIPTAEELGIPKELL
HHHHHHHHCCCCEEEEEEECCEEEEEEEEHHCCCCCCCCHHHHHHHCCCHHHHCCHHHHH
KDLSLPLQITSRPFRNIAEKYNMKESELVELIKELKEKGVIKDYGATVNGDKVGIKENAM
HHCCCCEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCEECCCCCCCCCEECCCCCEE
MLVNSDDIESSCYNLAKNLKEATHVVLRESDKKWDYLCYAMIHGANKKIIFEVAKKGVEI
EEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHEEEEEHCCCCCHHHHHHHHCCCEE
TKAKSYMLLFSLDNLKPGIVI
EECCCEEEEEEECCCCCCCCC
>Mature Secondary Structure
MELSEIDKKLIMELEYHFPFNEKPFSEISERLGISEEEIIKKTKELLSNEIIKRVGMYVN
CCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCEEE
FRAKGMEGALIAAEIPIENLEKYRKITLAIKELTHNYIRNHPKYNVWFVLKAESKDKLKE
EEECCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHH
NVKKILEESNGRDYVILFSKKTLKLSVKYDIIRGVSYSEPEEIHEKIPTAEELGIPKELL
HHHHHHHHCCCCEEEEEEECCEEEEEEEEHHCCCCCCCCHHHHHHHCCCHHHHCCHHHHH
KDLSLPLQITSRPFRNIAEKYNMKESELVELIKELKEKGVIKDYGATVNGDKVGIKENAM
HHCCCCEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCEECCCCCCCCCEECCCCCEE
MLVNSDDIESSCYNLAKNLKEATHVVLRESDKKWDYLCYAMIHGANKKIIFEVAKKGVEI
EEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHEEEEEHCCCCCHHHHHHHHCCCEE
TKAKSYMLLFSLDNLKPGIVI
EECCCEEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7747927 [H]