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The map label for this gene is soxC [H]

Identifier: 15920315

GI number: 15920315

Start: 156777

End: 158477

Strand: Direct

Name: soxC [H]

Synonym: ST0137

Alternate gene names: 15920315

Gene position: 156777-158477 (Clockwise)

Preceding gene: 15920314

Following gene: 15920316

Centisome position: 5.82

GC content: 36.74

Gene sequence:

>1701_bases
ATGGAGGAGAGACAAGAGAGGAAAGAAGAACAACAACAAAAGAAGTCAGGATTTTTTGATGCAATCCTTGACAGAATAGG
GATAAACGAAGCACCACTATTTAGAACTCCCGACTACATGTATAATGTTTCATATTGGCTTGGAGGATTAGTAGCTGCAA
GTTTCGCATATACAGTGATTACTGGGTTAATCTTACTCCTCCTTTATAATCCAGCTAATGCATATCAACAAACACAAACA
ATAATTAATGATATACCATATGGAGCTGTAATACTATTCAGTCACCTTTATGGAGCTTACATTATGATTATCCTAGTTTA
CATTCACATGTTTAGGAATTTCTTCAAAGGAGCTTATAAAAAACCGAGAGAATTACAATGGGTTACTGGAGTATTACTCC
TAGCATTAACACTAGGAGCTTCATTCTTTGGTTACAGCTTAGTAGGAGACGTATTAGGAATAAATGCGGTAGATATAGGT
AGTTCCTTACTTATAGGAACAGGATTCCCCGGTGCTACTACAGTAGTAGGCTGGCTATTTGGTCCCGGAATAGATGCAGT
ACAATCCAGTAATCCAGCAGTTAGAGCTGAGTTCTTCAGTAGAATTCTAGGTTGGCACATAATAATGGTAGCATTAATTG
GTTTACTATTTATGTTCCACTTAATGTTAGCTGAGAGATATGGAATGACACCATCTGCAAAAGAAAAGCCCAGAGTACCA
GCTTACTACACAAAGGAAGAGCAAGAGAAGTTTAACCCGTGGTGGCCAAGAAACTTCGTATATATGTTATCCTTAGTATT
AATGACATGGGGAGTAATACTAATTGTACCAGATGTATTAGCAAACTTGAACTCCATTGTAAAGCTACCGATAGTAATTA
ATCCATTCCCTGCACCACAAGCATTTACCCCAGCTGCAAATAATGTTCAACCATATCCTCCATGGTTCTTCTTATTCCTT
TACAAGTTCGTAGACTTCTTATTACCAAACGGAGTACCAATATTACCATCTATGGTAATTGCAGTACTTATCATAGGTTT
AGTAGTTCTGATGCTAATACCATTCTTCGAAAACAGCAACTTAATGTATATAAGCAGTAGAAAGTTCTGGACGTGGGTTA
TGTCAGTTCTGGCTTATTCACTGGTAGCATTATCAATATGGGGGTACTTATATCCTGGTGTGCCAGCTCCAACAAATCAG
CAAATCTTAGTTTTAGGAATTCCCGCATTAATCTTAGCAGTTATCATAGGACTGTCAGATAAAATCAGAAGAAGGAAAGA
AAAAGTACCTACACCGTCACAAATACCTAAAATAACGCCTACCTCAATTCTAGGAACATCTGTAGTAACATTACTGTTTG
CAGGAACATTTGGAGATTTCATAATAAGACCTAGTTTACTGGGCTTATTCTCACTATTCCCATTGGGTATTCTAGTTTAC
CACTTTGTTAGTAAAATGGTAAGGGCATTCAATAATAATAACGGAAATGGTGGTACAGTAACTTATCCAATAACAAAGAA
AATGGCATTTATTGCAATACCAGTAATTTTTGTAATTACAATATTCCTATTTGCATTATTCCTAGAGTTACCGAGTGTTG
GAGTACAGAGCACATATGCCGGAATTGATTTAGGTGTCATCTTCTTCCTATGGGGATACGCAATAAACTTGTACCACTAC
CTAGTTTATGTGAAAGATTAA

Upstream 100 bases:

>100_bases
AAAAACAGCAACACCTTCTACCACTCAAGTTTCTACATTCCCTCCAAGCAGTTTTACCCTTTCCTTGAATGGAAAGGATA
TGGTAAAAGAGGTGAAGTAA

Downstream 100 bases:

>100_bases
AAGGTAAAACTTTTTTTACTTTAACTTCAAATTTATATTTATGGAAATTGATAAGAAAAAATTAAAAGTTACACACTTTA
TATTCCCTCTTGTTTTACTT

Product: cytochrome b

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 566; Mature: 566

Protein sequence:

>566_residues
MEERQERKEEQQQKKSGFFDAILDRIGINEAPLFRTPDYMYNVSYWLGGLVAASFAYTVITGLILLLLYNPANAYQQTQT
IINDIPYGAVILFSHLYGAYIMIILVYIHMFRNFFKGAYKKPRELQWVTGVLLLALTLGASFFGYSLVGDVLGINAVDIG
SSLLIGTGFPGATTVVGWLFGPGIDAVQSSNPAVRAEFFSRILGWHIIMVALIGLLFMFHLMLAERYGMTPSAKEKPRVP
AYYTKEEQEKFNPWWPRNFVYMLSLVLMTWGVILIVPDVLANLNSIVKLPIVINPFPAPQAFTPAANNVQPYPPWFFLFL
YKFVDFLLPNGVPILPSMVIAVLIIGLVVLMLIPFFENSNLMYISSRKFWTWVMSVLAYSLVALSIWGYLYPGVPAPTNQ
QILVLGIPALILAVIIGLSDKIRRRKEKVPTPSQIPKITPTSILGTSVVTLLFAGTFGDFIIRPSLLGLFSLFPLGILVY
HFVSKMVRAFNNNNGNGGTVTYPITKKMAFIAIPVIFVITIFLFALFLELPSVGVQSTYAGIDLGVIFFLWGYAINLYHY
LVYVKD

Sequences:

>Translated_566_residues
MEERQERKEEQQQKKSGFFDAILDRIGINEAPLFRTPDYMYNVSYWLGGLVAASFAYTVITGLILLLLYNPANAYQQTQT
IINDIPYGAVILFSHLYGAYIMIILVYIHMFRNFFKGAYKKPRELQWVTGVLLLALTLGASFFGYSLVGDVLGINAVDIG
SSLLIGTGFPGATTVVGWLFGPGIDAVQSSNPAVRAEFFSRILGWHIIMVALIGLLFMFHLMLAERYGMTPSAKEKPRVP
AYYTKEEQEKFNPWWPRNFVYMLSLVLMTWGVILIVPDVLANLNSIVKLPIVINPFPAPQAFTPAANNVQPYPPWFFLFL
YKFVDFLLPNGVPILPSMVIAVLIIGLVVLMLIPFFENSNLMYISSRKFWTWVMSVLAYSLVALSIWGYLYPGVPAPTNQ
QILVLGIPALILAVIIGLSDKIRRRKEKVPTPSQIPKITPTSILGTSVVTLLFAGTFGDFIIRPSLLGLFSLFPLGILVY
HFVSKMVRAFNNNNGNGGTVTYPITKKMAFIAIPVIFVITIFLFALFLELPSVGVQSTYAGIDLGVIFFLWGYAINLYHY
LVYVKD
>Mature_566_residues
MEERQERKEEQQQKKSGFFDAILDRIGINEAPLFRTPDYMYNVSYWLGGLVAASFAYTVITGLILLLLYNPANAYQQTQT
IINDIPYGAVILFSHLYGAYIMIILVYIHMFRNFFKGAYKKPRELQWVTGVLLLALTLGASFFGYSLVGDVLGINAVDIG
SSLLIGTGFPGATTVVGWLFGPGIDAVQSSNPAVRAEFFSRILGWHIIMVALIGLLFMFHLMLAERYGMTPSAKEKPRVP
AYYTKEEQEKFNPWWPRNFVYMLSLVLMTWGVILIVPDVLANLNSIVKLPIVINPFPAPQAFTPAANNVQPYPPWFFLFL
YKFVDFLLPNGVPILPSMVIAVLIIGLVVLMLIPFFENSNLMYISSRKFWTWVMSVLAYSLVALSIWGYLYPGVPAPTNQ
QILVLGIPALILAVIIGLSDKIRRRKEKVPTPSQIPKITPTSILGTSVVTLLFAGTFGDFIIRPSLLGLFSLFPLGILVY
HFVSKMVRAFNNNNGNGGTVTYPITKKMAFIAIPVIFVITIFLFALFLELPSVGVQSTYAGIDLGVIFFLWGYAINLYHY
LVYVKD

Specific function: Binds 2 heme groups (b586 and b606) which are not covalently bound to the protein [H]

COG id: COG1290

COG function: function code C; Cytochrome b subunit of the bc complex

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b family [H]

Homologues:

Organism=Homo sapiens, GI251831119, Length=215, Percent_Identity=25.5813953488372, Blast_Score=68, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016175
- InterPro:   IPR005798
- InterPro:   IPR005797
- InterPro:   IPR016174 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 63413; Mature: 63413

Theoretical pI: Translated: 9.59; Mature: 9.59

Prosite motif: PS51002 CYTB_NTER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEERQERKEEQQQKKSGFFDAILDRIGINEAPLFRTPDYMYNVSYWLGGLVAASFAYTVI
CCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
TGLILLLLYNPANAYQQTQTIINDIPYGAVILFSHLYGAYIMIILVYIHMFRNFFKGAYK
HHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
KPRELQWVTGVLLLALTLGASFFGYSLVGDVLGINAVDIGSSLLIGTGFPGATTVVGWLF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHH
GPGIDAVQSSNPAVRAEFFSRILGWHIIMVALIGLLFMFHLMLAERYGMTPSAKEKPRVP
CCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
AYYTKEEQEKFNPWWPRNFVYMLSLVLMTWGVILIVPDVLANLNSIVKLPIVINPFPAPQ
CEECCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHEECCEEECCCCCCC
AFTPAANNVQPYPPWFFLFLYKFVDFLLPNGVPILPSMVIAVLIIGLVVLMLIPFFENSN
CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
LMYISSRKFWTWVMSVLAYSLVALSIWGYLYPGVPAPTNQQILVLGIPALILAVIIGLSD
EEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEHHHHHHHHHHCCCH
KIRRRKEKVPTPSQIPKITPTSILGTSVVTLLFAGTFGDFIIRPSLLGLFSLFPLGILVY
HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HFVSKMVRAFNNNNGNGGTVTYPITKKMAFIAIPVIFVITIFLFALFLELPSVGVQSTYA
HHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
GIDLGVIFFLWGYAINLYHYLVYVKD
HHHHHHHHHHHHHHHHHHHHEEEECC
>Mature Secondary Structure
MEERQERKEEQQQKKSGFFDAILDRIGINEAPLFRTPDYMYNVSYWLGGLVAASFAYTVI
CCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
TGLILLLLYNPANAYQQTQTIINDIPYGAVILFSHLYGAYIMIILVYIHMFRNFFKGAYK
HHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
KPRELQWVTGVLLLALTLGASFFGYSLVGDVLGINAVDIGSSLLIGTGFPGATTVVGWLF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHH
GPGIDAVQSSNPAVRAEFFSRILGWHIIMVALIGLLFMFHLMLAERYGMTPSAKEKPRVP
CCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
AYYTKEEQEKFNPWWPRNFVYMLSLVLMTWGVILIVPDVLANLNSIVKLPIVINPFPAPQ
CEECCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHEECCEEECCCCCCC
AFTPAANNVQPYPPWFFLFLYKFVDFLLPNGVPILPSMVIAVLIIGLVVLMLIPFFENSN
CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
LMYISSRKFWTWVMSVLAYSLVALSIWGYLYPGVPAPTNQQILVLGIPALILAVIIGLSD
EEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEHHHHHHHHHHCCCH
KIRRRKEKVPTPSQIPKITPTSILGTSVVTLLFAGTFGDFIIRPSLLGLFSLFPLGILVY
HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HFVSKMVRAFNNNNGNGGTVTYPITKKMAFIAIPVIFVITIFLFALFLELPSVGVQSTYA
HHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
GIDLGVIFFLWGYAINLYHYLVYVKD
HHHHHHHHHHHHHHHHHHHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1372250 [H]