Definition Dinoroseobacter shibae DFL 12 chromosome, complete genome.
Accession NC_009952
Length 3,789,584

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Identifier: 159043539

GI number:

Start: 1009203

End: 1013882

Strand: Reverse

Name: Not Available

Synonym: Dshi_0990

Alternate gene names: NA

Gene position: NA

Preceding gene: 159043540

Following gene: 159043538

Centisome position: NA

GC content: NA

Gene sequence:

>4680_bases
TTGTCAGATCCAGCGATTTCGAAAGTGCTCGAAGCGGCTCGCCGCAAGCTGCTGGACACCGGGACTCGTAACCGCCTCGT
CCATGTAAACCGGGCAAACACACGCGCAAATTGCCTCAACATCATCAATGAACGCGCCGACGACGTCTTTGCCATTCTTC
GCAGCCAATCGCGCAAGATGCGCTTCAAGGCCATGGGAAAGGATAAGTCCAGCGAAGGGCAGGACATGCTTCTGGCCCTG
CCAGAGCCCGAGATCCCCGAGGGTGCGGACCGCTTAACGGATCTCTTCCTAGAGACTCCACTTGGCCCGGAGGCACAGGC
ACGCAGACTACTTCGGCTGGCAACGAACGCCAAGACAGCAGAGGAGGAGCAGGGCCTCAACATCCTCTACCTCGCCATGG
GCTTCCTGCAATGGCGCGAAAGCCCCTCCTCCGAGACGCTGCGTGAAGCTCCTCTGATCTTGCTGCCTGTGCAACTGATC
CGCAACGAGCGGACGTCGACCTACGATATTCTGTGCCGCGACGACGACATCGCCACTAACTTGCCACTGCAACAACGCCT
CAGGACCGACTTCGGCATTTCACTGCCGGAGATCGAGGAGGGCGAAGACTGGAAACCCTCTGACTATTTTGCCCAGGTTC
GAGACGCGATCTCCGGCCAGCCGGGATGGGCGCTGGACGCGGACGGAATGCAGCTCGGCTTCTTCTCCTTCGCCAAGCTT
CTGATGCATCGCGATCTCGATACCGCGACCTGGCCCGAGGGAGCTTTTGCCGAAAACGATTTGTTGCGTGGGCTGTTGAC
CGAAGGGTTCGAAGCGCCGACGCCCATTTTCGGGCCGGACGATCGATTGGACGATATCCTGGACCCTGCGGAAATTGTGC
AGGTCATCGACGCTGATGCCTCACAAACCAAGGTGATCGAGGAGGTAAGGAGGGGTGCAAGCCTTGTGGTACAGGGACCG
CCTGGAACCGGAAAATCCCAGACGATTACTAACCTGATCGCGGCAGCTGCTCATGACGGAAAGACCGTGCTCTTCGTCGC
TGAGAAGATGGCTGCTTTGTCGGTTGTACACGATCGCCTTGTGCGGGCAGGGTTACGCGACATTTGCCTCGAACTGCACT
CGCGTACAGCCAACAAGAAGGCGCTTGCGCAGGAGTTGGGACGGACTTTGATGGCGAGCGCCCAGGCATTGCCTGGCACG
CCTGACCCCGCGCGACTGCGCAGCACACGGGACAATTTGAACCGGATCACTTCGTTGCTCCATGATCCTCTGCCATCCTC
CGGCGATACACCGTTCCGCGCAATTGCCGAGATCTGTGGGTTCATTGGAAATGGCGCACCGCCACCTTGCATCCCGCTTG
AGGGCCTTGACGAGCTTGACCAATGCAAGCGCGACGCCGCCTGCGCTGCCCTGTCCAAATATGCCGAGGCACTGGAACGC
GCGGGCCCGCCTGAACAGCACCCCTTTCGAGGCACCGGTGCGCTTGACTTACAGCCGACGGACCTAGCGCGCCTTGAAGA
CGAACTCACCGGCGCTGCTTCTGAAATCGAAATACTCCTGAGCGAAGGCCAACGCCTCGCTGACGCTACTGGTTTGGCAG
CGCCCAATTCATTGGGCGAGGTTGACGCTCTTGGCGCTGCGCTGAGTGCGCTTGCCGGTATTCCGCAGGGCGCCAAGGAC
TGGATTGCTCCGCTCTTCGAGCACGTTAGTTCCTCCCGCCTCGATGAAGCGCTTGCAGTGGGTGCATCTTGGGCCGACGC
GAAGCAGTCTGCAGAAACACGTTTCGTCGAGGCTGCATGGTCTGCCCAAGTCACAAGCATTCGAACGGCATTGGCCAAGG
GGCAAGCCTCGTTCTTCTCTCGTCTCTTCGGAGGATATCGACGGGCATCGGCGGAACTTGCTGGTCTGCTTTCGGGACCT
TTGCCGAAGTCGCCATCAGAGCGACTGGCACTCGTCGATGAGATCATGAAGGTTCAATCGCTGCGCCACTCGCTGGCAGA
TGAGGAAGCCTGGCTCCAGGCGATGCTCGGTCCAACATGGCGTGGTGAGCGGACCCCTTTTTCCGTCGCCGCCTCCGCTT
CGAAATGGTTGGCCGGGCTACGGGCAACCGGCAACATTGGTTCTTCGGACCAACTTGTTTCTTCCCTGGATGCAGTGCCC
GACCCAGAAGCTGCGGCCAAAGAGATCAAAACAAAATCCATCGCTTGCCGCCAGAGAATCGATGCTCCGATCACGCGGCT
ACAATTGGATGTGGTCCGTGCCGACTTGGGCACCGACTTGGAAAATGCATCGTTGTCGGAAATGCGTGAAGCATTCTTGC
AGATGGCGAGCGATACAGCCTGCTACGGAGATTGGGTTGGGCTTGCCCGCGCCATTGCATCCGCGATCGACGCCGGAGCT
GAAGGGGTTGTAGACGCCGTTGCAGACGAACGCGTTCCGCCGCAGCGCGCAGCGCAGGAATTTGCCTATGCGTGTGCAGA
GGCCCGCTGGAACGCCGCAAGGGGCGCCCGGCCTGAGCTCAACGACTTACCGCAGCTTGATCGCCATGATCTCGTAGCCC
TGTTCTCCGACCTCGAGAAGGAGCGCATCGACACAGCACGCAACCTGATCCTCTCGCGGCACTTCGAACAGATGCCTCGT
GGCACAATGGGCGAGATGGGCATCATCCGTGGAGAAATCGCCCGCAAGCGCGGCCACAAACCAATCCGCTGGGTGATGCG
GAATGCCGGCCCGATGGTTCAACGCATCAAGCCGGTCATGCTGATGAGTCCGATTTCAGTAGCGCAGTTCTTGCCTCCGG
GCAGCGCAGAGTTCGATATTCTGGTGATCGATGAAGCCTCGCAGATCAAACCCGAAGATGCGTTGGGAGTCATTGCCCGG
GCACGCCAGATTGTAGTGGTAGGAGACCAGAAACAGCTTCCGCCCACGTCGTTCTTCGACCGCTTGGTCGACGATGTCGA
GGAAAATGACGACGAAGAAGAAGCCGTCGTCGGCGCCACAGCGGCCGATATGGAAAGCATCCTTTCGCTTTGCGAAGCCC
GTGGACTGCGGCAACGCATGCTCGAATGGCACTACAGATCACGCGATCCGTCTTTGATTCAGATTTCGAATGCGGAGTTT
TATGAAGACCGGCTGGTTCTTCCCCCCTCTCCGCTGCAGCTTGACCCCGACTACGGCCTGAAATTTCGGCGCGTCCCTGG
CATTTATGCGCGCGGCGGTAGCGGCTTGGGCCGACAAGGAACCAACCGGATCGAGGCCGAGGCCGTCGTTGCCGCTATGG
CCGATCACGCCCGCAATTGGCCTGAGCTCTCTCTTGGTGTCGTCGCCTTTTCCAAGGCCCAGTCCAATATGTTGACAGAA
GTGCTCGAACTCGCCCGCCGCCGTGATCCGGTGCTGGATGCGTTCCTGCGTGAGGGCAAGTCTGAGGACGTCTTCGTCAA
AAATATCGAGAACGTTCAGGGCGACGAACGCGATGTGATCCTGATCTCGGTTGGATACGGCCCTCAGGAGCCGAACGGGC
GCTTACCTTCAATGAGCTTCGGTCCGGTCAACGGTGAAGGCGGAGAACGACGACTGAACGTGCTTTTCTCTCGCTCGCGG
GTGCGCTGCGAGGTCTTTGCGTCATTCGATCCCGGCGATATCGACCCGTCACGCAGCAGCCGTGAAGGGCCGCGTTTGCT
CAAACGGTTCCTTGATTTTGCCAAGACGGGACAGATCGAAACCCACACCGTCACCGGCCTCGAGGCCGACAGTCCGTTCG
AAGAAGATGTCGCACGGGTGATCCGATCAGAGGGTTTCTTGGCGGACGCGCAGGTTGGAAGTGCGGGCTTTCGCATCGAC
ATCGGCGTACGACATCCCGACCAGCCCGGTCAGTATCTTCTGGCCGTGGAATGTGACGGCGCTGCCTATCATGCAGCGCT
CTGGGCGCGCGAACGCGATCGGCTGAGACAGGGCATACTTGAAAACCTCGGCTGGCGGTTCCATCGCATTTGGAGCACCG
ACTGGTTCCACCATCGCTCACGAGAAGTCGAAAAACTAAGGGCTGCTATTGTTGAAGCACGCGAAGCTCTCAATGACGGT
GTCCAAGTGCGCGGAGCCAATCAAGGAGCCACAAACATACCGGCTTCGGAGGAGGTTTCAGAGCATCAGCCGGAGACTAT
CGATATCGGGCATCTCGCTTTGACTGCGCCGCCCTATGTACGGGCGGAGCTCTCGGTCCGCTCGTCGGTCGAACCGCACG
AGGCACCGGTACAGCAGCTTTCGGAGCTTGTTTCGCGCATCGTAGCGATTGAGGGACCGATACACGCCGACGAGATCGCA
CGTCGGATCGCTGCCGCCTTCGGACGCTCACGCACCGGGAACCGTATTGCCGATGCAGCCTCCCGTGCTGTTCGATTGGC
TCTGCAACGCGATACTGAGCTGCGCCGGGATGGCGCCTTTCTGATGACGTCCGCGCAAGCAGAAACACCACCCGTCCGTG
ATCGGAGCAGCGAAACTGGGACCGTTCTTAAGGCCGAATACCTGCCTCCGAGCGAGATCGCAGCCGCTGCAAAGCTGGTA
CTGAAGGAAAGCGGTGAGGTTGGGCAAGATGACCTTGTTCGGGCCGTGGCTCGCCTATTCGGGTTCCAGAGAGTCGGCAC
TGATCTTTCGGAAGCGATACGAAACGGCCTGCCAAAATGA

Upstream 100 bases:

>100_bases
CGGTGTCTTGTGTCTCACATTTCTGCAAGTCACTGGGTTGACAGATATTGCGCCCTCGTAGCCTATTGAATTATATGAAA
AACTTGGCGGAGAAGGTGAT

Downstream 100 bases:

>100_bases
CTGAATGCGTCCGGTGGATTTGTGTCCGCATTCACGCCTTGGCAGCAGAGACTGCGCAGTTTGGGGGCGAAGCATTTGCG
GCCATGGAACGCAGCGGTTG

Product: putative DNA helicase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>1559_residues
MSDPAISKVLEAARRKLLDTGTRNRLVHVNRANTRANCLNIINERADDVFAILRSQSRKMRFKAMGKDKSSEGQDMLLAL
PEPEIPEGADRLTDLFLETPLGPEAQARRLLRLATNAKTAEEEQGLNILYLAMGFLQWRESPSSETLREAPLILLPVQLI
RNERTSTYDILCRDDDIATNLPLQQRLRTDFGISLPEIEEGEDWKPSDYFAQVRDAISGQPGWALDADGMQLGFFSFAKL
LMHRDLDTATWPEGAFAENDLLRGLLTEGFEAPTPIFGPDDRLDDILDPAEIVQVIDADASQTKVIEEVRRGASLVVQGP
PGTGKSQTITNLIAAAAHDGKTVLFVAEKMAALSVVHDRLVRAGLRDICLELHSRTANKKALAQELGRTLMASAQALPGT
PDPARLRSTRDNLNRITSLLHDPLPSSGDTPFRAIAEICGFIGNGAPPPCIPLEGLDELDQCKRDAACAALSKYAEALER
AGPPEQHPFRGTGALDLQPTDLARLEDELTGAASEIEILLSEGQRLADATGLAAPNSLGEVDALGAALSALAGIPQGAKD
WIAPLFEHVSSSRLDEALAVGASWADAKQSAETRFVEAAWSAQVTSIRTALAKGQASFFSRLFGGYRRASAELAGLLSGP
LPKSPSERLALVDEIMKVQSLRHSLADEEAWLQAMLGPTWRGERTPFSVAASASKWLAGLRATGNIGSSDQLVSSLDAVP
DPEAAAKEIKTKSIACRQRIDAPITRLQLDVVRADLGTDLENASLSEMREAFLQMASDTACYGDWVGLARAIASAIDAGA
EGVVDAVADERVPPQRAAQEFAYACAEARWNAARGARPELNDLPQLDRHDLVALFSDLEKERIDTARNLILSRHFEQMPR
GTMGEMGIIRGEIARKRGHKPIRWVMRNAGPMVQRIKPVMLMSPISVAQFLPPGSAEFDILVIDEASQIKPEDALGVIAR
ARQIVVVGDQKQLPPTSFFDRLVDDVEENDDEEEAVVGATAADMESILSLCEARGLRQRMLEWHYRSRDPSLIQISNAEF
YEDRLVLPPSPLQLDPDYGLKFRRVPGIYARGGSGLGRQGTNRIEAEAVVAAMADHARNWPELSLGVVAFSKAQSNMLTE
VLELARRRDPVLDAFLREGKSEDVFVKNIENVQGDERDVILISVGYGPQEPNGRLPSMSFGPVNGEGGERRLNVLFSRSR
VRCEVFASFDPGDIDPSRSSREGPRLLKRFLDFAKTGQIETHTVTGLEADSPFEEDVARVIRSEGFLADAQVGSAGFRID
IGVRHPDQPGQYLLAVECDGAAYHAALWARERDRLRQGILENLGWRFHRIWSTDWFHHRSREVEKLRAAIVEAREALNDG
VQVRGANQGATNIPASEEVSEHQPETIDIGHLALTAPPYVRAELSVRSSVEPHEAPVQQLSELVSRIVAIEGPIHADEIA
RRIAAAFGRSRTGNRIADAASRAVRLALQRDTELRRDGAFLMTSAQAETPPVRDRSSETGTVLKAEYLPPSEIAAAAKLV
LKESGEVGQDDLVRAVARLFGFQRVGTDLSEAIRNGLPK

Sequences:
NA

Specific function: NA

COG id: COG1112

COG function: function code L; Superfamily I DNA and RNA helicases and helicase subunits

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA