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The map label for this gene is ocd2 [H]

Identifier: 159041728

GI number: 159041728

Start: 1221108

End: 1222064

Strand: Reverse

Name: ocd2 [H]

Synonym: Cmaq_1163

Alternate gene names: 159041728

Gene position: 1222064-1221108 (Counterclockwise)

Preceding gene: 159041730

Following gene: 159041726

Centisome position: 58.82

GC content: 44.62

Gene sequence:

>957_bases
ATGACACTTTACATTAGGGAGGGGGAGGTGAATAAGTTACTTACATATAATGAGGCAATTAAGGCCGTTGAGGATGGGTT
TAGGTTACTTGGGTTAGGGAAGGCGGTTAACTTACCTAGGCGTAGGGTTGTGTTACCTAATGCTATACTTCATGTTCTTC
AAAGCGGTGTCTTAGGTGACTATAATGTTGCTGGTTTAAAGGCATACATGAGTACTAGGCAGGGGACTAGGTTCATTGTC
CTATTATTCAGCGTTGAGACGGGGGAATTATTAGCGATTATTGAGGCTGATAGGCTTGGGCAAATTAGGACAGGGGCAGC
GTCTGTTGTGGCGAGTAAGTATATGGCTAACTCAATGAGTGAATTAGGCATAGTTGGTTCAGGTAGGCAGGCTAGGGCTC
AGTTTGAGGCATTCAACTCCACGGGCATGCTTAGGAGGGTTAAGGTGATTAGTAGGAGTAGGGCTAATGCCGAGGCATTC
GCATCCTACATTAAGTCCAATGGCGTTGACGCAGTGATTGTTAATGATTATAGGGAAGTATGCAAAGTTGACGTCCTAGT
GACCGCAACAAACTCAAGGGAACCATTCATAAAGGGTGAATACCTAAGTGAAGGCATTCACGTTAATGCAATTGGAAGCA
ACTGGAGGAATAGGGCTGAATTAGCACCTGATGCCGTTAATAAGGCTGATTTAATCGCCGTTGATGACCTGGAGCAGGCT
AAGGAGGAGGCAGGGGACTTAATAATGACTGGTGAGGCTGTTTGGGGTAGGGTGGTTAAATTATCGGATATAGTTATAGG
CAATGTTAAGGGCAGGGAGAATTCGCAATCAATAACAATCTTCAAGTCCCTGGGCATATCCATTGAGGACATTACCGTGG
CTAAGCTAATCTACGATAAGGCCATTAAGGAGGGGATTGGAGTTAATATAGAGTTCAACGGAGTATTCAACCCATAA

Upstream 100 bases:

>100_bases
TAATTCACTTCCAGCGGCACCGTGTTTTAAATCCTTGCAGTGAGTTAAGTTCATTAACCCTTAAATACACCTCAAAGCCC
CAACCTAAGGGGTAGTGGTC

Downstream 100 bases:

>100_bases
CCAGTGACGTAACCATCGCCCTTACGCCTTAACTACTGAATCTTATAAAAGCTTAAAAATGGGGACGCATGATTAATGAG
AACCGCCGGGGTGGCCGAGC

Product: ornithine cyclodeaminase

Products: NA

Alternate protein names: OCD 2 [H]

Number of amino acids: Translated: 318; Mature: 317

Protein sequence:

>318_residues
MTLYIREGEVNKLLTYNEAIKAVEDGFRLLGLGKAVNLPRRRVVLPNAILHVLQSGVLGDYNVAGLKAYMSTRQGTRFIV
LLFSVETGELLAIIEADRLGQIRTGAASVVASKYMANSMSELGIVGSGRQARAQFEAFNSTGMLRRVKVISRSRANAEAF
ASYIKSNGVDAVIVNDYREVCKVDVLVTATNSREPFIKGEYLSEGIHVNAIGSNWRNRAELAPDAVNKADLIAVDDLEQA
KEEAGDLIMTGEAVWGRVVKLSDIVIGNVKGRENSQSITIFKSLGISIEDITVAKLIYDKAIKEGIGVNIEFNGVFNP

Sequences:

>Translated_318_residues
MTLYIREGEVNKLLTYNEAIKAVEDGFRLLGLGKAVNLPRRRVVLPNAILHVLQSGVLGDYNVAGLKAYMSTRQGTRFIV
LLFSVETGELLAIIEADRLGQIRTGAASVVASKYMANSMSELGIVGSGRQARAQFEAFNSTGMLRRVKVISRSRANAEAF
ASYIKSNGVDAVIVNDYREVCKVDVLVTATNSREPFIKGEYLSEGIHVNAIGSNWRNRAELAPDAVNKADLIAVDDLEQA
KEEAGDLIMTGEAVWGRVVKLSDIVIGNVKGRENSQSITIFKSLGISIEDITVAKLIYDKAIKEGIGVNIEFNGVFNP
>Mature_317_residues
TLYIREGEVNKLLTYNEAIKAVEDGFRLLGLGKAVNLPRRRVVLPNAILHVLQSGVLGDYNVAGLKAYMSTRQGTRFIVL
LFSVETGELLAIIEADRLGQIRTGAASVVASKYMANSMSELGIVGSGRQARAQFEAFNSTGMLRRVKVISRSRANAEAFA
SYIKSNGVDAVIVNDYREVCKVDVLVTATNSREPFIKGEYLSEGIHVNAIGSNWRNRAELAPDAVNKADLIAVDDLEQAK
EEAGDLIMTGEAVWGRVVKLSDIVIGNVKGRENSQSITIFKSLGISIEDITVAKLIYDKAIKEGIGVNIEFNGVFNP

Specific function: Unknown

COG id: COG2423

COG function: function code E; Predicted ornithine cyclodeaminase, mu-crystallin homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ornithine cyclodeaminase family [H]

Homologues:

Organism=Homo sapiens, GI4503065, Length=248, Percent_Identity=33.0645161290323, Blast_Score=129, Evalue=5e-30,
Organism=Homo sapiens, GI62241008, Length=259, Percent_Identity=32.8185328185328, Blast_Score=128, Evalue=7e-30,
Organism=Drosophila melanogaster, GI24642678, Length=241, Percent_Identity=30.2904564315353, Blast_Score=87, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR003462 [H]

Pfam domain/function: PF02423 OCD_Mu_crystall [H]

EC number: =4.3.1.12 [H]

Molecular weight: Translated: 34609; Mature: 34478

Theoretical pI: Translated: 8.37; Mature: 8.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLYIREGEVNKLLTYNEAIKAVEDGFRLLGLGKAVNLPRRRVVLPNAILHVLQSGVLGD
CEEEEECCCCCCEEEHHHHHHHHHCCCEEEECCCCCCCCCCEEECCHHHHHHHHCCCCCC
YNVAGLKAYMSTRQGTRFIVLLFSVETGELLAIIEADRLGQIRTGAASVVASKYMANSMS
CCHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHH
ELGIVGSGRQARAQFEAFNSTGMLRRVKVISRSRANAEAFASYIKSNGVDAVIVNDYREV
HCCEECCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEECCHHHH
CKVDVLVTATNSREPFIKGEYLSEGIHVNAIGSNWRNRAELAPDAVNKADLIAVDDLEQA
HEEEEEEEECCCCCCCEECHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCEEEECCHHHH
KEEAGDLIMTGEAVWGRVVKLSDIVIGNVKGRENSQSITIFKSLGISIEDITVAKLIYDK
HHHHCCEEEECHHHHHEEEEEEEEEEECCCCCCCCCEEEEEECCCCEEHHHHHHHHHHHH
AIKEGIGVNIEFNGVFNP
HHHHCCCEEEEECCCCCC
>Mature Secondary Structure 
TLYIREGEVNKLLTYNEAIKAVEDGFRLLGLGKAVNLPRRRVVLPNAILHVLQSGVLGD
EEEEECCCCCCEEEHHHHHHHHHCCCEEEECCCCCCCCCCEEECCHHHHHHHHCCCCCC
YNVAGLKAYMSTRQGTRFIVLLFSVETGELLAIIEADRLGQIRTGAASVVASKYMANSMS
CCHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHH
ELGIVGSGRQARAQFEAFNSTGMLRRVKVISRSRANAEAFASYIKSNGVDAVIVNDYREV
HCCEECCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEECCHHHH
CKVDVLVTATNSREPFIKGEYLSEGIHVNAIGSNWRNRAELAPDAVNKADLIAVDDLEQA
HEEEEEEEECCCCCCCEECHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCEEEECCHHHH
KEEAGDLIMTGEAVWGRVVKLSDIVIGNVKGRENSQSITIFKSLGISIEDITVAKLIYDK
HHHHCCEEEECHHHHHEEEEEEEEEEECCCCCCCCCEEEEEECCCCEEHHHHHHHHHHHH
AIKEGIGVNIEFNGVFNP
HHHHCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481432 [H]