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The map label for this gene is tnpR [H]

Identifier: 159041590

GI number: 159041590

Start: 1071731

End: 1072423

Strand: Reverse

Name: tnpR [H]

Synonym: Cmaq_1021

Alternate gene names: 159041590

Gene position: 1072423-1071731 (Counterclockwise)

Preceding gene: 159041591

Following gene: 159041587

Centisome position: 51.62

GC content: 47.19

Gene sequence:

>693_bases
GTGGTTAATGCAGTATCCTACCTTAGGGTTTCCACGGAGGAGCAGGAGCTTGGTCTTGATGCTCAACGTGAGGGTGTTGT
TAAATTCGCCTCAATGAGGGGTATTGAGGTTAAGGAATTCTTCATTGATCAGGGCGTAAGCGGTAGCGTGCCTGCCTTGG
AGAGGACTGGTTTTAGGAGGGCTGTGGATTACGCTAAGGCTAATGGGGTAAACCTAATTGTCGTCTACAGTCTTGATAGG
CTTAGTAGGAGCTTCACTGATTTATTCAACCTACTTAGGAGGCTTGATGAGGATGGTATAAGCATAATCAGTGTCCGTGA
GGAGTTCCTACAGGACCTTAACCCAATGGTTAGGAGACTGGTGTTAAGCATACTGGCTTGGGCGGCGGACTATGAAAGAT
ACTTAATCAGGGAGAGGACTAGGGCTGCACTTAGGGCTAAGGGTATTGTTAAGGCAACTAGAATCGACCCAAGCCTAGCT
AAGGCTGTTACGGCACTGTACCAGTACGGTGAATCAATAAGGTCAATATCCAGTAAAGTCGGGTTAAGTGAAAGACAGGT
TAGGAAAATACTGTACAGTAACGGCGCATTAACACCACCACCAGGCACATGCCCAAGATGCTTCCACAGGCTTAAGTGGG
ATGAACAATACAACACATGGTACTGCCCAAACTGCGGGTACTTGAAGCCTTAA

Upstream 100 bases:

>100_bases
AACACTAGGCAGAAGCTAATGCGAAACATGCCTTAAGTACCTTTCTCCCTTTAAATCCCTTAAACACAAGCATTATTACT
CCCTGTTACCCGCCTAATGA

Downstream 100 bases:

>100_bases
TCCCACTCATTCACGTTTATGAAAGAACGGCAAGCCTCGTCTTTTTAAGGTGAGGTAGGGTTTTAACTAATGCGTTCAAG
CAACACTCGTCACCAGTTCT

Product: resolvase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MVNAVSYLRVSTEEQELGLDAQREGVVKFASMRGIEVKEFFIDQGVSGSVPALERTGFRRAVDYAKANGVNLIVVYSLDR
LSRSFTDLFNLLRRLDEDGISIISVREEFLQDLNPMVRRLVLSILAWAADYERYLIRERTRAALRAKGIVKATRIDPSLA
KAVTALYQYGESIRSISSKVGLSERQVRKILYSNGALTPPPGTCPRCFHRLKWDEQYNTWYCPNCGYLKP

Sequences:

>Translated_230_residues
MVNAVSYLRVSTEEQELGLDAQREGVVKFASMRGIEVKEFFIDQGVSGSVPALERTGFRRAVDYAKANGVNLIVVYSLDR
LSRSFTDLFNLLRRLDEDGISIISVREEFLQDLNPMVRRLVLSILAWAADYERYLIRERTRAALRAKGIVKATRIDPSLA
KAVTALYQYGESIRSISSKVGLSERQVRKILYSNGALTPPPGTCPRCFHRLKWDEQYNTWYCPNCGYLKP
>Mature_230_residues
MVNAVSYLRVSTEEQELGLDAQREGVVKFASMRGIEVKEFFIDQGVSGSVPALERTGFRRAVDYAKANGVNLIVVYSLDR
LSRSFTDLFNLLRRLDEDGISIISVREEFLQDLNPMVRRLVLSILAWAADYERYLIRERTRAALRAKGIVKATRIDPSLA
KAVTALYQYGESIRSISSKVGLSERQVRKILYSNGALTPPPGTCPRCFHRLKWDEQYNTWYCPNCGYLKP

Specific function: Resolvase catalyzes the resolution (a site-specific recombination) of the cointegrated replicon to yield the final transposition products [H]

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the site-specific recombinase resolvase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR006118
- InterPro:   IPR006119
- InterPro:   IPR006120 [H]

Pfam domain/function: PF02796 HTH_7; PF00239 Resolvase [H]

EC number: NA

Molecular weight: Translated: 26148; Mature: 26148

Theoretical pI: Translated: 9.62; Mature: 9.62

Prosite motif: PS00397 RECOMBINASES_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNAVSYLRVSTEEQELGLDAQREGVVKFASMRGIEVKEFFIDQGVSGSVPALERTGFRR
CCCHHHHHEECCCHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHH
AVDYAKANGVNLIVVYSLDRLSRSFTDLFNLLRRLDEDGISIISVREEFLQDLNPMVRRL
HHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
VLSILAWAADYERYLIRERTRAALRAKGIVKATRIDPSLAKAVTALYQYGESIRSISSKV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHC
GLSERQVRKILYSNGALTPPPGTCPRCFHRLKWDEQYNTWYCPNCGYLKP
CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCEECCCCCCCCC
>Mature Secondary Structure
MVNAVSYLRVSTEEQELGLDAQREGVVKFASMRGIEVKEFFIDQGVSGSVPALERTGFRR
CCCHHHHHEECCCHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHH
AVDYAKANGVNLIVVYSLDRLSRSFTDLFNLLRRLDEDGISIISVREEFLQDLNPMVRRL
HHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
VLSILAWAADYERYLIRERTRAALRAKGIVKATRIDPSLAKAVTALYQYGESIRSISSKV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHC
GLSERQVRKILYSNGALTPPPGTCPRCFHRLKWDEQYNTWYCPNCGYLKP
CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2170815; 2555186 [H]