| Definition | Caldivirga maquilingensis IC-167 chromosome, complete genome. |
|---|---|
| Accession | NC_009954 |
| Length | 2,077,567 |
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The map label for this gene is 159041486
Identifier: 159041486
GI number: 159041486
Start: 958675
End: 961659
Strand: Reverse
Name: 159041486
Synonym: Cmaq_0915
Alternate gene names: NA
Gene position: 961659-958675 (Counterclockwise)
Preceding gene: 159041488
Following gene: 159041485
Centisome position: 46.29
GC content: 42.51
Gene sequence:
>2985_bases ATGCCTAATGAACTAAGTGTCGAGTATTTCATTAACCCATCCATTGAGTTTAGGGGTGTTCCTTTTTGGTCTATTAATGA TAGGCTTAATGTTGATGAGTTGATTAGGCAGATTAGGTTGATTAAGGATGCTGGCTTTGGTGGTGTGTTTTTTCATGCTA GGGAGGGTTTACTAACACCATTCCTAAGCAATGAATGGTTTAAGGCACTTAAGGCCGTTGTTGAGGAGGCTGCTAGGATT GGGGTCAAGGTTTGGCTTTACGATGAGGATAGGTGGCCCTCAGGCTTCGCCGGTGGTCATGTACCAGCCCTCGGACCTGA GTATAGGGCTAAGGCCCTTATACTGTTCATACACAACATGGCTCTAGTGGGCCCTGAAACAGTGGCGTCGTTCAGGTGCA GTTTGAGTAATGACTTATTGCCCAGTGATTGTGTTAGGGTTAGTAGTAGTGAGGCGTTGGATGGTTACATTTACTTAAAC TTCATTGAGTACACCGCGCCATCAAGTAACTTTAGGTTTAATGGATTCAATTACGTTGATCTACTTAATCCAAGGGTCAC TGATGAATTCATAAGAACTGCCTATGAACCATACGTTAGGGAGCTTAAGGAACATATAGGTAACGTAGTGCCCGGCATAT TCACAGATGAACCCAATTTAAATGAATCAAGACCACCGAGGAGGCAAGTACCCCTAAGGCATTCACTATACTCAACATAC GCAATACCCTGGACGAGTAATTTCCCTGATTATTTTAAGGGGGTTAATGGTTATGATATTGTTGATAAGTTACCTGAATT ATTCTTCAACATGGGTTCCTTCACTAAGACTAGGTATGATTACTGGAGGACTGTGACCATGCTTTTCGTTGAGTCTTATA GTAGGAGGATTTACCAGTGGTGTGATGCTAATGGTTTAAGGTTCACTGGTCATTACCTTGGTGAGGATACACTCCTCTCC CAATTAACCGTTGGTGCTGTTATGCCTCACTACGAGTACATGCATATTCCCGGCATGGATCACTTAGGCTTAAGGATATG GGATATGCTCCTAACGGCTAAACAGGTGGCTAGTGTTGCTGATCAATTGGGTAAGGGGAGGGTTCTCAGTGAAACCTACG GTGCCACTGGGCATCACCCAACATTCGAGGATAGGAAGTGGATTGGGGACTTCCTATACGCCCTAGGCATTAACCTACTC AACCACCACCTAATCCCCTACTCCCTGAGGGGTAGGAGGAAGCATGATTACGGTTTAACAATACATTGGAGTCAACCATG GTGGCGGTATAATAGGATTATTGAGGATTACTTCGCTAGGCTTAGTTACGTACTATCACAGGGGGTTAGGTTAGTGGATG TATTAATCCTACACCCAATTGGCAGTGTTTGGGCAACCTACACGCCGGTTAATGAGTCTGAGGCTGCTGCTATTAATGAA TCATTCATGAGGATTCTTAGGGAGTTCACGAGAATGCATGTGGATTTCGAGCTTGGTGATGAGTTAATAATGGCTAAGCA TGCTGCAGTTGAAGGTAGTTTACTCAAGGTGGGTAGGGTGGGGTATAGGGTGGTTGTGATACCTCCAAGCATAACACTAG CCTCAAGCACAATTAAACTCCTCAGTGATTTTATTAATAATGGTGGATTAGTAATAGCCATTAAACCACTCCCAGCAATG ATTGATGGCGTGGAGACGCCTAGTATTAATGAATTCCTCAGTAGAGTTAAGGTTATTGATGATGTGGGTAAGCTTAATGA AGCCTTAGCCAGCGTTGAGAGGAGTATTATTGTTAATAGTCCAAGTGACAGTGATGGTGATGTACTGACGCATGTTAGGG AGATTGGGGATTCATTAGTTGTATTCATTGTTAATACAAGTAGGGTTAAGGGGCATGAGGTTGAGGTTGGTTTAAAGGGT TCATTTAAGGTTGAGGAATGGGATCCGTTAAAAGGCAGTATCAGTGACTACCCAGCCTCATTAAGGGATAGGTGGACGTG GATTAGGGTTAACCTTAACCCAGTTGATTCAAAACTACTCATACTTAAACCAGGTAAACCAATAATTGAGCAGAGTATTA ACTATGTTAAGGTTAGCGAGATTGAGTTAAGTGATGGCTGGGTTATACATAGACTCAACCCAAATGTACTAGTTCTGGAT TATGCAATGTTAATGCGTAGTGATGGTTCATGGAGTGGATTAATGCCGATCCCAAGGATTGCAAGCGAACTTATCAACAT GGGCTTTGGCTCCAGGTACACTCTTAAATTCACATTTAACGTATTAAGTAAACCTAAGGGTATTGTTAAATTAGTTATTG AGGGTACTGAATTATTAAACGCGGTCTCAGTTAATGGTACCGGCATTGATTTAAGTAAGCCCATTGGTCAATGGCTTGAC TGGAACTTCAAGATGTATGATATATCAGAATTAATTAAGGAGGGGGTTAATGAAATTGTTATTAGTGGTAGGGTTGGCTT AGAGCCATATACTATTAACCCAATATACATCCTCGGCGACTTCACAGTCGAGTTAAGGCCAAGGGCTCAATCATCATTAT CAGGGTGGGAACCAGAAACAGTTAAGTTAGGTGATTTAACGAGACAAGGCTACCCATTTTACGGCGGTTCAGTTGAGTTA ACGAGGAGCTTTAGAATACCTGACCAGTTCGATGATGCTCACTTGATTTTAAGATTCAATGCTGCATTAGCCCTTGTCAG TATAAACGATTCAGACGCCGGATTCCTAATAAACAGTACCGGTGAAATCAACATAACACGCTTCATAAGGCCTGGTGAAA ATAAGATTAAGGTAACCCTAGTGGGTACGTTGGGTAATGTACTGGGTCCATTACATGATAAGGGTGATTTAACGTATGTA AGGCCTGAATCATTCATGGTCATTGGCAGTGATTGGACTGATGACTACGTGTTAAGACCGTTCGGTCTTAGTGAAGCCAA GATAACACTACTTAAACGCAGGTGA
Upstream 100 bases:
>100_bases TATTCAGTATCGCTTGCAATCACCAGTGTATAATCGAGTTAACTTTTAATTTAATACTGATAACAGTAAGTGACTTATAT TTCACGGATCCTTGCTCTCA
Downstream 100 bases:
>100_bases ATGCCACGGTTAACTTAATGTGATTATGAACACTAAAACTAAACCTATACTTCACTTAAGGATGATTCATAGCCTTTTAC GTTATCCAGCATTAAGATTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 994; Mature: 993
Protein sequence:
>994_residues MPNELSVEYFINPSIEFRGVPFWSINDRLNVDELIRQIRLIKDAGFGGVFFHAREGLLTPFLSNEWFKALKAVVEEAARI GVKVWLYDEDRWPSGFAGGHVPALGPEYRAKALILFIHNMALVGPETVASFRCSLSNDLLPSDCVRVSSSEALDGYIYLN FIEYTAPSSNFRFNGFNYVDLLNPRVTDEFIRTAYEPYVRELKEHIGNVVPGIFTDEPNLNESRPPRRQVPLRHSLYSTY AIPWTSNFPDYFKGVNGYDIVDKLPELFFNMGSFTKTRYDYWRTVTMLFVESYSRRIYQWCDANGLRFTGHYLGEDTLLS QLTVGAVMPHYEYMHIPGMDHLGLRIWDMLLTAKQVASVADQLGKGRVLSETYGATGHHPTFEDRKWIGDFLYALGINLL NHHLIPYSLRGRRKHDYGLTIHWSQPWWRYNRIIEDYFARLSYVLSQGVRLVDVLILHPIGSVWATYTPVNESEAAAINE SFMRILREFTRMHVDFELGDELIMAKHAAVEGSLLKVGRVGYRVVVIPPSITLASSTIKLLSDFINNGGLVIAIKPLPAM IDGVETPSINEFLSRVKVIDDVGKLNEALASVERSIIVNSPSDSDGDVLTHVREIGDSLVVFIVNTSRVKGHEVEVGLKG SFKVEEWDPLKGSISDYPASLRDRWTWIRVNLNPVDSKLLILKPGKPIIEQSINYVKVSEIELSDGWVIHRLNPNVLVLD YAMLMRSDGSWSGLMPIPRIASELINMGFGSRYTLKFTFNVLSKPKGIVKLVIEGTELLNAVSVNGTGIDLSKPIGQWLD WNFKMYDISELIKEGVNEIVISGRVGLEPYTINPIYILGDFTVELRPRAQSSLSGWEPETVKLGDLTRQGYPFYGGSVEL TRSFRIPDQFDDAHLILRFNAALALVSINDSDAGFLINSTGEINITRFIRPGENKIKVTLVGTLGNVLGPLHDKGDLTYV RPESFMVIGSDWTDDYVLRPFGLSEAKITLLKRR
Sequences:
>Translated_994_residues MPNELSVEYFINPSIEFRGVPFWSINDRLNVDELIRQIRLIKDAGFGGVFFHAREGLLTPFLSNEWFKALKAVVEEAARI GVKVWLYDEDRWPSGFAGGHVPALGPEYRAKALILFIHNMALVGPETVASFRCSLSNDLLPSDCVRVSSSEALDGYIYLN FIEYTAPSSNFRFNGFNYVDLLNPRVTDEFIRTAYEPYVRELKEHIGNVVPGIFTDEPNLNESRPPRRQVPLRHSLYSTY AIPWTSNFPDYFKGVNGYDIVDKLPELFFNMGSFTKTRYDYWRTVTMLFVESYSRRIYQWCDANGLRFTGHYLGEDTLLS QLTVGAVMPHYEYMHIPGMDHLGLRIWDMLLTAKQVASVADQLGKGRVLSETYGATGHHPTFEDRKWIGDFLYALGINLL NHHLIPYSLRGRRKHDYGLTIHWSQPWWRYNRIIEDYFARLSYVLSQGVRLVDVLILHPIGSVWATYTPVNESEAAAINE SFMRILREFTRMHVDFELGDELIMAKHAAVEGSLLKVGRVGYRVVVIPPSITLASSTIKLLSDFINNGGLVIAIKPLPAM IDGVETPSINEFLSRVKVIDDVGKLNEALASVERSIIVNSPSDSDGDVLTHVREIGDSLVVFIVNTSRVKGHEVEVGLKG SFKVEEWDPLKGSISDYPASLRDRWTWIRVNLNPVDSKLLILKPGKPIIEQSINYVKVSEIELSDGWVIHRLNPNVLVLD YAMLMRSDGSWSGLMPIPRIASELINMGFGSRYTLKFTFNVLSKPKGIVKLVIEGTELLNAVSVNGTGIDLSKPIGQWLD WNFKMYDISELIKEGVNEIVISGRVGLEPYTINPIYILGDFTVELRPRAQSSLSGWEPETVKLGDLTRQGYPFYGGSVEL TRSFRIPDQFDDAHLILRFNAALALVSINDSDAGFLINSTGEINITRFIRPGENKIKVTLVGTLGNVLGPLHDKGDLTYV RPESFMVIGSDWTDDYVLRPFGLSEAKITLLKRR >Mature_993_residues PNELSVEYFINPSIEFRGVPFWSINDRLNVDELIRQIRLIKDAGFGGVFFHAREGLLTPFLSNEWFKALKAVVEEAARIG VKVWLYDEDRWPSGFAGGHVPALGPEYRAKALILFIHNMALVGPETVASFRCSLSNDLLPSDCVRVSSSEALDGYIYLNF IEYTAPSSNFRFNGFNYVDLLNPRVTDEFIRTAYEPYVRELKEHIGNVVPGIFTDEPNLNESRPPRRQVPLRHSLYSTYA IPWTSNFPDYFKGVNGYDIVDKLPELFFNMGSFTKTRYDYWRTVTMLFVESYSRRIYQWCDANGLRFTGHYLGEDTLLSQ LTVGAVMPHYEYMHIPGMDHLGLRIWDMLLTAKQVASVADQLGKGRVLSETYGATGHHPTFEDRKWIGDFLYALGINLLN HHLIPYSLRGRRKHDYGLTIHWSQPWWRYNRIIEDYFARLSYVLSQGVRLVDVLILHPIGSVWATYTPVNESEAAAINES FMRILREFTRMHVDFELGDELIMAKHAAVEGSLLKVGRVGYRVVVIPPSITLASSTIKLLSDFINNGGLVIAIKPLPAMI DGVETPSINEFLSRVKVIDDVGKLNEALASVERSIIVNSPSDSDGDVLTHVREIGDSLVVFIVNTSRVKGHEVEVGLKGS FKVEEWDPLKGSISDYPASLRDRWTWIRVNLNPVDSKLLILKPGKPIIEQSINYVKVSEIELSDGWVIHRLNPNVLVLDY AMLMRSDGSWSGLMPIPRIASELINMGFGSRYTLKFTFNVLSKPKGIVKLVIEGTELLNAVSVNGTGIDLSKPIGQWLDW NFKMYDISELIKEGVNEIVISGRVGLEPYTINPIYILGDFTVELRPRAQSSLSGWEPETVKLGDLTRQGYPFYGGSVELT RSFRIPDQFDDAHLILRFNAALALVSINDSDAGFLINSTGEINITRFIRPGENKIKVTLVGTLGNVLGPLHDKGDLTYVR PESFMVIGSDWTDDYVLRPFGLSEAKITLLKRR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 112357; Mature: 112226
Theoretical pI: Translated: 6.28; Mature: 6.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPNELSVEYFINPSIEFRGVPFWSINDRLNVDELIRQIRLIKDAGFGGVFFHAREGLLTP CCCCEEEEEEECCCEEECCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCC FLSNEWFKALKAVVEEAARIGVKVWLYDEDRWPSGFAGGHVPALGPEYRAKALILFIHNM CCCHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHCEEEEEEECH ALVGPETVASFRCSLSNDLLPSDCVRVSSSEALDGYIYLNFIEYTAPSSNFRFNGFNYVD HHCCHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCEEEEEEEEEECCCCCCEEECCCCEEE LLNPRVTDEFIRTAYEPYVRELKEHIGNVVPGIFTDEPNLNESRPPRRQVPLRHSLYSTY ECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHEE AIPWTSNFPDYFKGVNGYDIVDKLPELFFNMGSFTKTRYDYWRTVTMLFVESYSRRIYQW ECCCCCCCCHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH CDANGLRFTGHYLGEDTLLSQLTVGAVMPHYEYMHIPGMDHLGLRIWDMLLTAKQVASVA HCCCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHH DQLGKGRVLSETYGATGHHPTFEDRKWIGDFLYALGINLLNHHLIPYSLRGRRKHDYGLT HHHCCCCEEEHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCEE IHWSQPWWRYNRIIEDYFARLSYVLSQGVRLVDVLILHPIGSVWATYTPVNESEAAAINE EEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCCCHHHEEECCCCCCHHHHHHH SFMRILREFTRMHVDFELGDELIMAKHAAVEGSLLKVGRVGYRVVVIPPSITLASSTIKL HHHHHHHHHHHEEEEEECCCHHHHHHHHHCCCCCEEECCCCEEEEEECCCCEEHHHHHHH LSDFINNGGLVIAIKPLPAMIDGVETPSINEFLSRVKVIDDVGKLNEALASVERSIIVNS HHHHHCCCCEEEEEECCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEC PSDSDGDVLTHVREIGDSLVVFIVNTSRVKGHEVEVGLKGSFKVEEWDPLKGSISDYPAS CCCCCCHHHHHHHHCCCCEEEEEEECCCCCCCEEEEECCCCEECCCCCCCCCCCCCCCCC LRDRWTWIRVNLNPVDSKLLILKPGKPIIEQSINYVKVSEIELSDGWVIHRLNPNVLVLD HHCCEEEEEEEECCCCCEEEEECCCCHHHHCCCCEEEEEEEEECCCEEEEECCCCEEEEE YAMLMRSDGSWSGLMPIPRIASELINMGFGSRYTLKFTFNVLSKPKGIVKLVIEGTELLN EHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCEEEEEEECHHHHE AVSVNGTGIDLSKPIGQWLDWNFKMYDISELIKEGVNEIVISGRVGLEPYTINPIYILGD EEEECCCCCCCHHHHHHHHCCCEEEECHHHHHHHCHHHEEEECCCCCCEEEECEEEEEEE FTVELRPRAQSSLSGWEPETVKLGDLTRQGYPFYGGSVELTRSFRIPDQFDDAHLILRFN EEEEECCCCCCCCCCCCCCEEEECCCCCCCCCEECCCEEEEEEECCCCCCCCCEEEEEEE AALALVSINDSDAGFLINSTGEINITRFIRPGENKIKVTLVGTLGNVLGPLHDKGDLTYV EEEEEEEECCCCCCEEEECCCCEEEEEEECCCCCEEEEEEEECHHHHHCCCCCCCCEEEE RPESFMVIGSDWTDDYVLRPFGLSEAKITLLKRR CCCEEEEECCCCCCCEEECCCCCCCCEEEEEECC >Mature Secondary Structure PNELSVEYFINPSIEFRGVPFWSINDRLNVDELIRQIRLIKDAGFGGVFFHAREGLLTP CCCEEEEEEECCCEEECCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCC FLSNEWFKALKAVVEEAARIGVKVWLYDEDRWPSGFAGGHVPALGPEYRAKALILFIHNM CCCHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHCEEEEEEECH ALVGPETVASFRCSLSNDLLPSDCVRVSSSEALDGYIYLNFIEYTAPSSNFRFNGFNYVD HHCCHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCEEEEEEEEEECCCCCCEEECCCCEEE LLNPRVTDEFIRTAYEPYVRELKEHIGNVVPGIFTDEPNLNESRPPRRQVPLRHSLYSTY ECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHEE AIPWTSNFPDYFKGVNGYDIVDKLPELFFNMGSFTKTRYDYWRTVTMLFVESYSRRIYQW ECCCCCCCCHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH CDANGLRFTGHYLGEDTLLSQLTVGAVMPHYEYMHIPGMDHLGLRIWDMLLTAKQVASVA HCCCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHH DQLGKGRVLSETYGATGHHPTFEDRKWIGDFLYALGINLLNHHLIPYSLRGRRKHDYGLT HHHCCCCEEEHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCEE IHWSQPWWRYNRIIEDYFARLSYVLSQGVRLVDVLILHPIGSVWATYTPVNESEAAAINE EEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCCCHHHEEECCCCCCHHHHHHH SFMRILREFTRMHVDFELGDELIMAKHAAVEGSLLKVGRVGYRVVVIPPSITLASSTIKL HHHHHHHHHHHEEEEEECCCHHHHHHHHHCCCCCEEECCCCEEEEEECCCCEEHHHHHHH LSDFINNGGLVIAIKPLPAMIDGVETPSINEFLSRVKVIDDVGKLNEALASVERSIIVNS HHHHHCCCCEEEEEECCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEC PSDSDGDVLTHVREIGDSLVVFIVNTSRVKGHEVEVGLKGSFKVEEWDPLKGSISDYPAS CCCCCCHHHHHHHHCCCCEEEEEEECCCCCCCEEEEECCCCEECCCCCCCCCCCCCCCCC LRDRWTWIRVNLNPVDSKLLILKPGKPIIEQSINYVKVSEIELSDGWVIHRLNPNVLVLD HHCCEEEEEEEECCCCCEEEEECCCCHHHHCCCCEEEEEEEEECCCEEEEECCCCEEEEE YAMLMRSDGSWSGLMPIPRIASELINMGFGSRYTLKFTFNVLSKPKGIVKLVIEGTELLN EHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCEEEEEEECHHHHE AVSVNGTGIDLSKPIGQWLDWNFKMYDISELIKEGVNEIVISGRVGLEPYTINPIYILGD EEEECCCCCCCHHHHHHHHCCCEEEECHHHHHHHCHHHEEEECCCCCCEEEECEEEEEEE FTVELRPRAQSSLSGWEPETVKLGDLTRQGYPFYGGSVELTRSFRIPDQFDDAHLILRFN EEEEECCCCCCCCCCCCCCEEEECCCCCCCCCEECCCEEEEEEECCCCCCCCCEEEEEEE AALALVSINDSDAGFLINSTGEINITRFIRPGENKIKVTLVGTLGNVLGPLHDKGDLTYV EEEEEEEECCCCCCEEEECCCCEEEEEEECCCCCEEEEEEEECHHHHHCCCCCCCCEEEE RPESFMVIGSDWTDDYVLRPFGLSEAKITLLKRR CCCEEEEECCCCCCCEEECCCCCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA