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The map label for this gene is dpa [H]

Identifier: 159041443

GI number: 159041443

Start: 914996

End: 915904

Strand: Reverse

Name: dpa [H]

Synonym: Cmaq_0870

Alternate gene names: 159041443

Gene position: 915904-914996 (Counterclockwise)

Preceding gene: 159041444

Following gene: 159041441

Centisome position: 44.09

GC content: 43.67

Gene sequence:

>909_bases
ATGTTCAATAGACTTAAGTCAGCCTTCTCAAGCCTAGTGAAGGCTATTGGTGATGCAGTAACTCAAAGGGAATTAACAGA
GGATGATGTGAATAAGCTCCTGGGGGAGTTTGAGGAAAGGCTCATAGAATACGATGTAGCCTTAGATACCGCTGAAGCCT
TAATTAGTGAACTTAAGGCTAAGTTAATTGGCGTTAAGGTACCTAGGTTCAGTGATAATGATTACGTTAAGGCTCTGGTG
AGGGATACATTAATGAATCTACTATCAAGTATCCCTGACGTGGACTTCGATGAATTCATTAAAGGCGTTAAGAAGAGGCC
AATAGTACTCCTATTCCTTGGCCCAAATGGCTACGGTAAAACAACCACAATAGCTAAGTTAACTAATATGCTTCTTAAGA
GGGGCATGAGCGTTGTCTGGGCTGCCGCAGACACCTATAGGGCTGGGGCTGTTGAGCAATTGGAGGGGCATGCTGCTAAG
CTTGGGGTAAGGGTCATAAAGCACCCATACGGCTCAGACCCAGCCTCAGTGGCCTATGATGCAATAGAGCATGCTAAGGC
TAGGGGGATTAGCGTTGTTATGATTGATACCGCTGGTAGAATGCACACTGATAGGAACCTAATGGAGGAGCTTAGGAAGG
TTCACAGGGTTTCATCACCAGACGCCTCAATCTTCATAGTTGACGCATTAATGGGTAATGATGCCGTTGATGTTGCTAGA
ACATACAGTAAATACATACCCATTGACTTCGTTGTGGTCACTAAGGTTGACGCCTACGTTAAAGGTGGCGTAATATTAAC
CCTACTTTATGAACTTAAGAAGCCGATAATCTTCCTGGGTACTGGGCAGGGTTACGACGACTTAATTAAATTCAATAAAC
TAGACTTCATAAATAAACTACTGGAGTAG

Upstream 100 bases:

>100_bases
TTAGGAGCAGTAGTGAGGTGAGGGATCTATTAACAGTCATATACTCATCCCTAGCCCGCCCACAGGGTGGTGCGGTAGGG
CCTAAGGCGGGTCCGTAACC

Downstream 100 bases:

>100_bases
TTACTTGCGTAAGAATGCCTTAACATTATGGAGGCTTAATGTTAGGGTTTATAGGGATGCTGAGAAACGCATTCCTACTT
AACCTTAGGTTTAGTTAAGT

Product: signal recognition particle-docking protein FtsY

Products: NA

Alternate protein names: Docking protein; P41 [H]

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MFNRLKSAFSSLVKAIGDAVTQRELTEDDVNKLLGEFEERLIEYDVALDTAEALISELKAKLIGVKVPRFSDNDYVKALV
RDTLMNLLSSIPDVDFDEFIKGVKKRPIVLLFLGPNGYGKTTTIAKLTNMLLKRGMSVVWAAADTYRAGAVEQLEGHAAK
LGVRVIKHPYGSDPASVAYDAIEHAKARGISVVMIDTAGRMHTDRNLMEELRKVHRVSSPDASIFIVDALMGNDAVDVAR
TYSKYIPIDFVVVTKVDAYVKGGVILTLLYELKKPIIFLGTGQGYDDLIKFNKLDFINKLLE

Sequences:

>Translated_302_residues
MFNRLKSAFSSLVKAIGDAVTQRELTEDDVNKLLGEFEERLIEYDVALDTAEALISELKAKLIGVKVPRFSDNDYVKALV
RDTLMNLLSSIPDVDFDEFIKGVKKRPIVLLFLGPNGYGKTTTIAKLTNMLLKRGMSVVWAAADTYRAGAVEQLEGHAAK
LGVRVIKHPYGSDPASVAYDAIEHAKARGISVVMIDTAGRMHTDRNLMEELRKVHRVSSPDASIFIVDALMGNDAVDVAR
TYSKYIPIDFVVVTKVDAYVKGGVILTLLYELKKPIIFLGTGQGYDDLIKFNKLDFINKLLE
>Mature_302_residues
MFNRLKSAFSSLVKAIGDAVTQRELTEDDVNKLLGEFEERLIEYDVALDTAEALISELKAKLIGVKVPRFSDNDYVKALV
RDTLMNLLSSIPDVDFDEFIKGVKKRPIVLLFLGPNGYGKTTTIAKLTNMLLKRGMSVVWAAADTYRAGAVEQLEGHAAK
LGVRVIKHPYGSDPASVAYDAIEHAKARGISVVMIDTAGRMHTDRNLMEELRKVHRVSSPDASIFIVDALMGNDAVDVAR
TYSKYIPIDFVVVTKVDAYVKGGVILTLLYELKKPIIFLGTGQGYDDLIKFNKLDFINKLLE

Specific function: Probably involved in the signal sequence recognition [H]

COG id: COG0552

COG function: function code U; Signal recognition particle GTPase

Gene ontology:

Cell location: Inner Membrane-Associated [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GTP-binding SRP family [H]

Homologues:

Organism=Homo sapiens, GI295424842, Length=300, Percent_Identity=36, Blast_Score=166, Evalue=3e-41,
Organism=Homo sapiens, GI23308697, Length=300, Percent_Identity=36, Blast_Score=166, Evalue=3e-41,
Organism=Homo sapiens, GI4507215, Length=281, Percent_Identity=29.5373665480427, Blast_Score=132, Evalue=3e-31,
Organism=Homo sapiens, GI226371618, Length=203, Percent_Identity=34.9753694581281, Blast_Score=130, Evalue=1e-30,
Organism=Homo sapiens, GI89061728, Length=129, Percent_Identity=34.1085271317829, Blast_Score=91, Evalue=2e-18,
Organism=Escherichia coli, GI1789874, Length=263, Percent_Identity=36.1216730038023, Blast_Score=162, Evalue=3e-41,
Organism=Escherichia coli, GI1788963, Length=304, Percent_Identity=32.5657894736842, Blast_Score=155, Evalue=2e-39,
Organism=Caenorhabditis elegans, GI193206261, Length=312, Percent_Identity=37.1794871794872, Blast_Score=162, Evalue=3e-40,
Organism=Caenorhabditis elegans, GI17539958, Length=291, Percent_Identity=30.5841924398625, Blast_Score=140, Evalue=6e-34,
Organism=Saccharomyces cerevisiae, GI6325345, Length=295, Percent_Identity=29.1525423728814, Blast_Score=138, Evalue=1e-33,
Organism=Saccharomyces cerevisiae, GI6320498, Length=325, Percent_Identity=28.6153846153846, Blast_Score=128, Evalue=9e-31,
Organism=Drosophila melanogaster, GI24641198, Length=301, Percent_Identity=33.5548172757475, Blast_Score=149, Evalue=2e-36,
Organism=Drosophila melanogaster, GI17647949, Length=303, Percent_Identity=31.6831683168317, Blast_Score=138, Evalue=5e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004390
- InterPro:   IPR003593
- InterPro:   IPR000897
- InterPro:   IPR013822 [H]

Pfam domain/function: PF00448 SRP54; PF02881 SRP54_N [H]

EC number: NA

Molecular weight: Translated: 33471; Mature: 33471

Theoretical pI: Translated: 7.09; Mature: 7.09

Prosite motif: PS00300 SRP54

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNRLKSAFSSLVKAIGDAVTQRELTEDDVNKLLGEFEERLIEYDVALDTAEALISELKA
CCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLIGVKVPRFSDNDYVKALVRDTLMNLLSSIPDVDFDEFIKGVKKRPIVLLFLGPNGYGK
HHHHEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCEEEEEECCCCCCC
TTTIAKLTNMLLKRGMSVVWAAADTYRAGAVEQLEGHAAKLGVRVIKHPYGSDPASVAYD
HHHHHHHHHHHHHCCCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
AIEHAKARGISVVMIDTAGRMHTDRNLMEELRKVHRVSSPDASIFIVDALMGNDAVDVAR
HHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEHHCCCHHHHHH
TYSKYIPIDFVVVTKVDAYVKGGVILTLLYELKKPIIFLGTGQGYDDLIKFNKLDFINKL
HHHHCCCEEEEEEEEHHHHHHCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHH
LE
CC
>Mature Secondary Structure
MFNRLKSAFSSLVKAIGDAVTQRELTEDDVNKLLGEFEERLIEYDVALDTAEALISELKA
CCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLIGVKVPRFSDNDYVKALVRDTLMNLLSSIPDVDFDEFIKGVKKRPIVLLFLGPNGYGK
HHHHEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCEEEEEECCCCCCC
TTTIAKLTNMLLKRGMSVVWAAADTYRAGAVEQLEGHAAKLGVRVIKHPYGSDPASVAYD
HHHHHHHHHHHHHCCCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
AIEHAKARGISVVMIDTAGRMHTDRNLMEELRKVHRVSSPDASIFIVDALMGNDAVDVAR
HHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEHHCCCHHHHHH
TYSKYIPIDFVVVTKVDAYVKGGVILTLLYELKKPIIFLGTGQGYDDLIKFNKLDFINKL
HHHHCCCEEEEEEEEHHHHHHCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHH
LE
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1658539; 8935656 [H]