| Definition | Caldivirga maquilingensis IC-167 chromosome, complete genome. |
|---|---|
| Accession | NC_009954 |
| Length | 2,077,567 |
Click here to switch to the map view.
The map label for this gene is 159041308
Identifier: 159041308
GI number: 159041308
Start: 766694
End: 767278
Strand: Reverse
Name: 159041308
Synonym: Cmaq_0734
Alternate gene names: NA
Gene position: 767278-766694 (Counterclockwise)
Preceding gene: 159041311
Following gene: 159041307
Centisome position: 36.93
GC content: 41.37
Gene sequence:
>585_bases ATGGCTTTAGTGAGTAAAATCTTAACATACATGGGTATTGCAGCTGCAGTATTGGCTTGGGTAATAATATTAACTAGCAT TAGTCTTAATCCCTGGTTCAACATGTTTAGTAATGCCTTAAGTGATTTAGGTAATCCCCACGCTAATTACTACTGGCTAT ATAACTACGGCTTAGTCTTAACGGCCACCTTAATGCTGTTGTTCTCACTCTACTTACTGTTTGTTTCTGAAAATAAGGTT GAGGCAATGGGGTCATCATTCGTCACCATTGCCTCAATCTTCCTCGCGCTAATAGGTATTTTTCATGAGGGAACCTATCC CCACACCTTTGTTTCTGAATGGTTCTTCACTCAAATGGATTTAGCTGTTGTGACTTGGAGCATTGGCCTAATAGTGGGGA GGAGACTTAATTACGGTATCCCACTGCTGCTACTTGGCTTAATAGCCCCCATACCGGCTCTGTTAATTAAATGGCCTTCA ACCGCTATTCTTGAGACTTACGGTATAGTAATAATTGATGCATGGGCTATAGCTGCAACTATATTAATTAGGAGCAGGAT CCCTAGGGTTGGCTGTGGGGTTTAA
Upstream 100 bases:
>100_bases TCCGAGTCTCCAGTTTAGTGGCGTTTAAGGGGGTCTTCTTATATTTCATTAATGCATTGACTCATTAATACTTTTAAGCA TAAAGCTATAGTAGGCTTAT
Downstream 100 bases:
>100_bases TGCTTAAAAAGGTCGAGGGCAAATGGTGAATCATGGCTGAGGCGGCTTATGCACCTTTAAAGGTGGTGGTTTGCCCTATA TGCAACTACATGGGTGATGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 194; Mature: 193
Protein sequence:
>194_residues MALVSKILTYMGIAAAVLAWVIILTSISLNPWFNMFSNALSDLGNPHANYYWLYNYGLVLTATLMLLFSLYLLFVSENKV EAMGSSFVTIASIFLALIGIFHEGTYPHTFVSEWFFTQMDLAVVTWSIGLIVGRRLNYGIPLLLLGLIAPIPALLIKWPS TAILETYGIVIIDAWAIAATILIRSRIPRVGCGV
Sequences:
>Translated_194_residues MALVSKILTYMGIAAAVLAWVIILTSISLNPWFNMFSNALSDLGNPHANYYWLYNYGLVLTATLMLLFSLYLLFVSENKV EAMGSSFVTIASIFLALIGIFHEGTYPHTFVSEWFFTQMDLAVVTWSIGLIVGRRLNYGIPLLLLGLIAPIPALLIKWPS TAILETYGIVIIDAWAIAATILIRSRIPRVGCGV >Mature_193_residues ALVSKILTYMGIAAAVLAWVIILTSISLNPWFNMFSNALSDLGNPHANYYWLYNYGLVLTATLMLLFSLYLLFVSENKVE AMGSSFVTIASIFLALIGIFHEGTYPHTFVSEWFFTQMDLAVVTWSIGLIVGRRLNYGIPLLLLGLIAPIPALLIKWPST AILETYGIVIIDAWAIAATILIRSRIPRVGCGV
Specific function: Unknown
COG id: COG3371
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21448; Mature: 21317
Theoretical pI: Translated: 7.59; Mature: 7.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALVSKILTYMGIAAAVLAWVIILTSISLNPWFNMFSNALSDLGNPHANYYWLYNYGLVL CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEEECHHHH TATLMLLFSLYLLFVSENKVEAMGSSFVTIASIFLALIGIFHEGTYPHTFVSEWFFTQMD HHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH LAVVTWSIGLIVGRRLNYGIPLLLLGLIAPIPALLIKWPSTAILETYGIVIIDAWAIAAT HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEEHHHHHHHH ILIRSRIPRVGCGV HHHHHCCCCCCCCC >Mature Secondary Structure ALVSKILTYMGIAAAVLAWVIILTSISLNPWFNMFSNALSDLGNPHANYYWLYNYGLVL HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEEECHHHH TATLMLLFSLYLLFVSENKVEAMGSSFVTIASIFLALIGIFHEGTYPHTFVSEWFFTQMD HHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH LAVVTWSIGLIVGRRLNYGIPLLLLGLIAPIPALLIKWPSTAILETYGIVIIDAWAIAAT HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEEHHHHHHHH ILIRSRIPRVGCGV HHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA