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The map label for this gene is rpl11p [H]

Identifier: 159041254

GI number: 159041254

Start: 712507

End: 713016

Strand: Reverse

Name: rpl11p [H]

Synonym: Cmaq_0676

Alternate gene names: 159041254

Gene position: 713016-712507 (Counterclockwise)

Preceding gene: 159041255

Following gene: 159041252

Centisome position: 34.32

GC content: 43.73

Gene sequence:

>510_bases
ATGAAGAGGGTTATTAGAATTCAGACAAGCGGCGGTAAGGTACCCCCACAGGCCATGCAGCAGCTGCAGGGTGCTGGGTT
AAATGCGCAGGAGGTGGTTAATCTAATTAATAATAGGATTAAGCAGGTGGCTGCGCTTGGTTTCCAGAACCTTAACATTG
AGGTTGAGTACGATGATTCATCTAAGAGGGTTCTTAGGATTAACATTGATTACCCACCAATAACAGACATTATACTTAAG
GTTGCTGGTAAGGATTCACCAAGCCACCAGGCCGGTAAGGAGATAATAGGTGACATACCACTGGAGAAGTTGGCTGAGGT
TGCTTTAATTAAGATTGAGGAGTTGGGTAGTAAGTCCTTTAAATCAGCCTTAAAGCAGGTGGTTAGTACATGCAGGTCCA
TTGGATTAACTGTGAACGGTAAGGATCCCAAGGAGGTTATTAAGGAGATTGATCAGGGAGCCTACGATGAGTTGATATCG
AAGTATGAGAAGAACATTAACCCCAGTTAA

Upstream 100 bases:

>100_bases
CATCTGTCTTGGTTTCCACTCCGGTTAAACCTAATGCCTCAGTCATGTAATTAAGGTCACCTTGGGTCAAATTTAAAAGA
GGGGGTGTGAACGGGGCTTA

Downstream 100 bases:

>100_bases
GTAACCCTTAGCCGACACTCCTTAATTCAAGCCTCATAAGTAACCTAGCAATATCAATCTGGGACACCGTCTTCTCAATA
ATGGACCATGTTCCCTTACC

Product: 50S ribosomal protein L11

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MKRVIRIQTSGGKVPPQAMQQLQGAGLNAQEVVNLINNRIKQVAALGFQNLNIEVEYDDSSKRVLRINIDYPPITDIILK
VAGKDSPSHQAGKEIIGDIPLEKLAEVALIKIEELGSKSFKSALKQVVSTCRSIGLTVNGKDPKEVIKEIDQGAYDELIS
KYEKNINPS

Sequences:

>Translated_169_residues
MKRVIRIQTSGGKVPPQAMQQLQGAGLNAQEVVNLINNRIKQVAALGFQNLNIEVEYDDSSKRVLRINIDYPPITDIILK
VAGKDSPSHQAGKEIIGDIPLEKLAEVALIKIEELGSKSFKSALKQVVSTCRSIGLTVNGKDPKEVIKEIDQGAYDELIS
KYEKNINPS
>Mature_169_residues
MKRVIRIQTSGGKVPPQAMQQLQGAGLNAQEVVNLINNRIKQVAALGFQNLNIEVEYDDSSKRVLRINIDYPPITDIILK
VAGKDSPSHQAGKEIIGDIPLEKLAEVALIKIEELGSKSFKSALKQVVSTCRSIGLTVNGKDPKEVIKEIDQGAYDELIS
KYEKNINPS

Specific function: This protein binds directly to 23S ribosomal RNA [H]

COG id: COG0080

COG function: function code J; Ribosomal protein L11

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L11P family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000911
- InterPro:   IPR020786
- InterPro:   IPR020783
- InterPro:   IPR020784 [H]

Pfam domain/function: PF00298 Ribosomal_L11 [H]

EC number: NA

Molecular weight: Translated: 18549; Mature: 18549

Theoretical pI: Translated: 8.98; Mature: 8.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRVIRIQTSGGKVPPQAMQQLQGAGLNAQEVVNLINNRIKQVAALGFQNLNIEVEYDDS
CCCEEEEECCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
SKRVLRINIDYPPITDIILKVAGKDSPSHQAGKEIIGDIPLEKLAEVALIKIEELGSKSF
CCEEEEEECCCCCHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHH
KSALKQVVSTCRSIGLTVNGKDPKEVIKEIDQGAYDELISKYEKNINPS
HHHHHHHHHHHHHCCCEECCCCHHHHHHHHCCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKRVIRIQTSGGKVPPQAMQQLQGAGLNAQEVVNLINNRIKQVAALGFQNLNIEVEYDDS
CCCEEEEECCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
SKRVLRINIDYPPITDIILKVAGKDSPSHQAGKEIIGDIPLEKLAEVALIKIEELGSKSF
CCEEEEEECCCCCHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHH
KSALKQVVSTCRSIGLTVNGKDPKEVIKEIDQGAYDELISKYEKNINPS
HHHHHHHHHHHHHCCCEECCCCHHHHHHHHCCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11792869 [H]