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The map label for this gene is arnC [H]

Identifier: 159041198

GI number: 159041198

Start: 652231

End: 653343

Strand: Reverse

Name: arnC [H]

Synonym: Cmaq_0619

Alternate gene names: 159041198

Gene position: 653343-652231 (Counterclockwise)

Preceding gene: 159041200

Following gene: 159041197

Centisome position: 31.45

GC content: 46.45

Gene sequence:

>1113_bases
ATGAGTGATGCACCTGATGCATCAATAATAGTACCAACACTTAATGAAGCTGGTAACGTAGGTAGGCTTATTGAGGAATT
AGCCAGTAACCTTAAGGGCATTAACTATGAGGTGGTAATTGTTGATGATGGATCAACTGATGGAACCGTTAAGGTTGCTG
AGGAGACTGCTAAGAAGCTTGGGGTTAATCTTAAGGTTATTGAGAGGGGTAGGAGACTTGGATTATCAAGCGCAGTGATT
GATGGTGTAAAGGCCAGTAGAGGGGGTATTATTGTTGTAATGGATGCTGATTTACAACACCCACCATCAGTAGTGCCTAA
GCTTATTGAGGCCGTTTCAAACGGCGCTGATTTAGCCGTCGCTTCTAGGTACATTAATGGTGGCGGCATAGCAGGTGATT
GGCCCCTCCTTAGGAGGATAATAAGCCGTGGGGCAGTTACCCTAGCCCACATACTAGTGCCCACAGCCAGGGATGTTAAG
GACCCTGTCTCAGGCTTCTTCGCAGTGAAGAGGAGTGCCGTATGCATAGATAAGCCCCATGGTGACTACAAGATCCTCCT
CGACATACTCGCCCTCTGTAGGGTTAGGAGGATAGTGGAGGTTCCCTACGTTTTTAGAACCAGGGAGGCTGGCTCATCTA
AGCTAGGTACTAGGCAAATAATAAACTACGTTAAGCAGATTGCCTCAATATCACTGAGTCTGCTTTCCCTAAGTGGTTAT
AGGCCCATTAAATTCGCCATTGTCGGCGCAATAGGCCTAGTTGTCTCAGAACTGGTGCTTCACGTATTCTGGAGGATACT
TGGGTTAGCGTACTTCATATCCCTCATACCAGCTATTGAGGCGGGTATTGCTAATAACTTCACCCTAAATAAGGTGTGGA
CGTTTAAAGACAGGTCAGTGGGTTACTGGGTGGGGTTAGGTAAGTATCATGTGGCTAGTTTAACCGGAACAGCGGTGACG
TATGCTGTAACGAACCTGCTTCACTACGGCCTAGGCGTAAATGGTTACGTAGCATACGTAATAGGTGTTATATTCGGTTT
CATAGCCAACTACATTATGGCCGAGGTCTACGTCTTCAAATACCGGCGCACGGGCACTGATAATAACCTTTAA

Upstream 100 bases:

>100_bases
CTTATTCGGAAACCAATATAGTTTATCTTAAACTATTTATGAGTATTGGTTTGAGGAAAAACTATTAAAGTACCCTTGCC
TATTGCTAATGGAGTTAAGG

Downstream 100 bases:

>100_bases
AAACATCAACATTATTGATGCTTGTGGCCAACAATAAGAGGGGTGGGTGTGATCCAGTGAGTATTAGGCTTGAGGCTGAG
GACTTTAGACTATGGTACAC

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: Undecaprenyl-phosphate Ara4FN transferase; Ara4FN transferase [H]

Number of amino acids: Translated: 370; Mature: 369

Protein sequence:

>370_residues
MSDAPDASIIVPTLNEAGNVGRLIEELASNLKGINYEVVIVDDGSTDGTVKVAEETAKKLGVNLKVIERGRRLGLSSAVI
DGVKASRGGIIVVMDADLQHPPSVVPKLIEAVSNGADLAVASRYINGGGIAGDWPLLRRIISRGAVTLAHILVPTARDVK
DPVSGFFAVKRSAVCIDKPHGDYKILLDILALCRVRRIVEVPYVFRTREAGSSKLGTRQIINYVKQIASISLSLLSLSGY
RPIKFAIVGAIGLVVSELVLHVFWRILGLAYFISLIPAIEAGIANNFTLNKVWTFKDRSVGYWVGLGKYHVASLTGTAVT
YAVTNLLHYGLGVNGYVAYVIGVIFGFIANYIMAEVYVFKYRRTGTDNNL

Sequences:

>Translated_370_residues
MSDAPDASIIVPTLNEAGNVGRLIEELASNLKGINYEVVIVDDGSTDGTVKVAEETAKKLGVNLKVIERGRRLGLSSAVI
DGVKASRGGIIVVMDADLQHPPSVVPKLIEAVSNGADLAVASRYINGGGIAGDWPLLRRIISRGAVTLAHILVPTARDVK
DPVSGFFAVKRSAVCIDKPHGDYKILLDILALCRVRRIVEVPYVFRTREAGSSKLGTRQIINYVKQIASISLSLLSLSGY
RPIKFAIVGAIGLVVSELVLHVFWRILGLAYFISLIPAIEAGIANNFTLNKVWTFKDRSVGYWVGLGKYHVASLTGTAVT
YAVTNLLHYGLGVNGYVAYVIGVIFGFIANYIMAEVYVFKYRRTGTDNNL
>Mature_369_residues
SDAPDASIIVPTLNEAGNVGRLIEELASNLKGINYEVVIVDDGSTDGTVKVAEETAKKLGVNLKVIERGRRLGLSSAVID
GVKASRGGIIVVMDADLQHPPSVVPKLIEAVSNGADLAVASRYINGGGIAGDWPLLRRIISRGAVTLAHILVPTARDVKD
PVSGFFAVKRSAVCIDKPHGDYKILLDILALCRVRRIVEVPYVFRTREAGSSKLGTRQIINYVKQIASISLSLLSLSGYR
PIKFAIVGAIGLVVSELVLHVFWRILGLAYFISLIPAIEAGIANNFTLNKVWTFKDRSVGYWVGLGKYHVASLTGTAVTY
AVTNLLHYGLGVNGYVAYVIGVIFGFIANYIMAEVYVFKYRRTGTDNNL

Specific function: Catalyzes the transfer of 4-deoxy-4-formamido-L- arabinose from UDP to undecaprenyl phosphate. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides [H]

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Homo sapiens, GI4503363, Length=239, Percent_Identity=36.4016736401674, Blast_Score=129, Evalue=4e-30,
Organism=Escherichia coli, GI1788588, Length=238, Percent_Identity=27.3109243697479, Blast_Score=82, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI71999402, Length=232, Percent_Identity=36.2068965517241, Blast_Score=127, Evalue=8e-30,
Organism=Saccharomyces cerevisiae, GI6325441, Length=237, Percent_Identity=37.1308016877637, Blast_Score=144, Evalue=2e-35,
Organism=Saccharomyces cerevisiae, GI6325029, Length=220, Percent_Identity=30, Blast_Score=63, Evalue=9e-11,
Organism=Drosophila melanogaster, GI24585265, Length=236, Percent_Identity=36.4406779661017, Blast_Score=131, Evalue=9e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022857
- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: =2.7.8.30 [H]

Molecular weight: Translated: 39956; Mature: 39825

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDAPDASIIVPTLNEAGNVGRLIEELASNLKGINYEVVIVDDGSTDGTVKVAEETAKKL
CCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEHHHHHHHH
GVNLKVIERGRRLGLSSAVIDGVKASRGGIIVVMDADLQHPPSVVPKLIEAVSNGADLAV
CCCCEEECCCHHCCCHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCHHH
ASRYINGGGIAGDWPLLRRIISRGAVTLAHILVPTARDVKDPVSGFFAVKRSAVCIDKPH
HHHEECCCCCCCCHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCEEEEECCC
GDYKILLDILALCRVRRIVEVPYVFRTREAGSSKLGTRQIINYVKQIASISLSLLSLSGY
CCHHHHHHHHHHHHHHHHHHCCHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
RPIKFAIVGAIGLVVSELVLHVFWRILGLAYFISLIPAIEAGIANNFTLNKVWTFKDRSV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECEEEEECCCCC
GYWVGLGKYHVASLTGTAVTYAVTNLLHYGLGVNGYVAYVIGVIFGFIANYIMAEVYVFK
EEEEECCCCEEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHE
YRRTGTDNNL
EEECCCCCCC
>Mature Secondary Structure 
SDAPDASIIVPTLNEAGNVGRLIEELASNLKGINYEVVIVDDGSTDGTVKVAEETAKKL
CCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEHHHHHHHH
GVNLKVIERGRRLGLSSAVIDGVKASRGGIIVVMDADLQHPPSVVPKLIEAVSNGADLAV
CCCCEEECCCHHCCCHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCHHH
ASRYINGGGIAGDWPLLRRIISRGAVTLAHILVPTARDVKDPVSGFFAVKRSAVCIDKPH
HHHEECCCCCCCCHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCEEEEECCC
GDYKILLDILALCRVRRIVEVPYVFRTREAGSSKLGTRQIINYVKQIASISLSLLSLSGY
CCHHHHHHHHHHHHHHHHHHCCHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
RPIKFAIVGAIGLVVSELVLHVFWRILGLAYFISLIPAIEAGIANNFTLNKVWTFKDRSV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECEEEEECCCCC
GYWVGLGKYHVASLTGTAVTYAVTNLLHYGLGVNGYVAYVIGVIFGFIANYIMAEVYVFK
EEEEECCCCEEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHE
YRRTGTDNNL
EEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA