| Definition | Caldivirga maquilingensis IC-167 chromosome, complete genome. |
|---|---|
| Accession | NC_009954 |
| Length | 2,077,567 |
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The map label for this gene is 159041128
Identifier: 159041128
GI number: 159041128
Start: 580934
End: 581461
Strand: Reverse
Name: 159041128
Synonym: Cmaq_0547
Alternate gene names: NA
Gene position: 581461-580934 (Counterclockwise)
Preceding gene: 159041129
Following gene: 159041125
Centisome position: 27.99
GC content: 42.99
Gene sequence:
>528_bases ATGGATCAACAGGAATTAAATAGATTAAGGGACCTGGTTAAGATGGAGCAGGAGAGTAAGGAGCTTGTGAAGTTACCCTA CAGGTCCTATAGGGAGTTAATTAGTAGACTGGTGGGTAATGTTAAGTTTGGTGGGGCATTGGAGAATACATTAACATTAA CGTACTTAGGCATGGTTAAGGACCTGCTGATTGCATTACTTAGGGCTAGGTTACTTAAGATACTTGACCAAGCCTCAGAG GGTAATGTACCCAGGGGTAACCTTATGGTTGAGGAGACTAAATTAGTCTCAGTATTAGAGGACTTGGAGCGTCTGCTTAA GCCAAGCGCCCTTAAGGCGCCTAGTAGGGTTATGATAGTTAGGTTCACTTCAAGCTACTTCAGTATTAAGACCAGTAAGG GTAGCATGATTAATGAACCCACTGTGGGTGACTTGGTTATTTTACCCAAGGAGGATGCGATTGAGTTGGTTACTAATTTT AAGGTTGCTAAGGCGTATAGGATTAAGGTTAGGGGGCGTTCCCCTTAA
Upstream 100 bases:
>100_bases GTTGTTTATAAGTATGAGAAGGGTGAGGTTAATGAACTTAGGAGGATTAGTAAGTACAGTGAGGTTTTAAATAGGCTTGA TGAATTAGCCCTGTAGCGTG
Downstream 100 bases:
>100_bases GCCACCTAATGGTTAACCTAACCGCATCCGCGCTACTGTACCTTGGGGACCAACCCAGTTTACTTAACTTATCAACATCA AGAAGCATGTACTTAACATC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 175; Mature: 175
Protein sequence:
>175_residues MDQQELNRLRDLVKMEQESKELVKLPYRSYRELISRLVGNVKFGGALENTLTLTYLGMVKDLLIALLRARLLKILDQASE GNVPRGNLMVEETKLVSVLEDLERLLKPSALKAPSRVMIVRFTSSYFSIKTSKGSMINEPTVGDLVILPKEDAIELVTNF KVAKAYRIKVRGRSP
Sequences:
>Translated_175_residues MDQQELNRLRDLVKMEQESKELVKLPYRSYRELISRLVGNVKFGGALENTLTLTYLGMVKDLLIALLRARLLKILDQASE GNVPRGNLMVEETKLVSVLEDLERLLKPSALKAPSRVMIVRFTSSYFSIKTSKGSMINEPTVGDLVILPKEDAIELVTNF KVAKAYRIKVRGRSP >Mature_175_residues MDQQELNRLRDLVKMEQESKELVKLPYRSYRELISRLVGNVKFGGALENTLTLTYLGMVKDLLIALLRARLLKILDQASE GNVPRGNLMVEETKLVSVLEDLERLLKPSALKAPSRVMIVRFTSSYFSIKTSKGSMINEPTVGDLVILPKEDAIELVTNF KVAKAYRIKVRGRSP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19791; Mature: 19791
Theoretical pI: Translated: 10.33; Mature: 10.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDQQELNRLRDLVKMEQESKELVKLPYRSYRELISRLVGNVKFGGALENTLTLTYLGMVK CCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH DLLIALLRARLLKILDQASEGNVPRGNLMVEETKLVSVLEDLERLLKPSALKAPSRVMIV HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE RFTSSYFSIKTSKGSMINEPTVGDLVILPKEDAIELVTNFKVAKAYRIKVRGRSP EEECCEEEEECCCCCCCCCCCCCCEEEECCHHHHHHHHCCHHEEEEEEEECCCCC >Mature Secondary Structure MDQQELNRLRDLVKMEQESKELVKLPYRSYRELISRLVGNVKFGGALENTLTLTYLGMVK CCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH DLLIALLRARLLKILDQASEGNVPRGNLMVEETKLVSVLEDLERLLKPSALKAPSRVMIV HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE RFTSSYFSIKTSKGSMINEPTVGDLVILPKEDAIELVTNFKVAKAYRIKVRGRSP EEECCEEEEECCCCCCCCCCCCCCEEEECCHHHHHHHHCCHHEEEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA