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The map label for this gene is 159041092

Identifier: 159041092

GI number: 159041092

Start: 545346

End: 545906

Strand: Reverse

Name: 159041092

Synonym: Cmaq_0509

Alternate gene names: NA

Gene position: 545906-545346 (Counterclockwise)

Preceding gene: 159041093

Following gene: 159041091

Centisome position: 26.28

GC content: 45.99

Gene sequence:

>561_bases
ATGCAGGGGTCTTCAGTAAGTAAAGCCTTAGTCACACCTGGTGAGGAATTGGGTGTTGAGGAGGAGTATCTTCCAGGCGA
TAATGCGTACGTTGATTCAGGCTACGTTAAATCAATGGTTCTTGGCATTGCTGAGTGGGATAGAGTTAACCACGTGGTTA
ACGTTAAGCCACTTAAATTAAGCCTAATTAGGCCTGGGCAAATAGTGTACGGTAAGGTGTACTACTTCCCAAACGATAAG
GTCGCCATGGTTAGGATCTTCGCTGTTCAACATCAGGATGGGGTTAGGAGGATTCAAGCTGAGACGGGTATACTTTACGT
AACTTATGCCTCCGAGGAGAGGTTAAGCACTATTTATGATGCGGTGGGTTTAGGGGACTTAATTAAGGCGAGGGTTTTAT
CAAGTAAGCCACCATACCACATAAGCCTAAGGGGCCCATTACTCGGTGTTGTTGAAACTAGGTGTCCTCAATGCAGGGCA
GTGATAGTACCATCAACATCAAGTAAAATAACGTGCCCAGTCTGCGGCTTTGTCTTTAGGAGGAAAGTGGCGGCATCATG
A

Upstream 100 bases:

>100_bases
ATAACTACAAGGTCAGGTAGAAGATGAGTACTGGATCCTTAATCCACGGCGCATTCATATTAGGGTTAGTGTTATTAATA
GTGCTTAGTTTAGCAGAACG

Downstream 100 bases:

>100_bases
TTCAGTCTACTCCAGTTAATCAATGAGTAGATAACTTTAAGTTAAGCGGCATCAGCCTTAAGTAGGTTTAAGGCTTGGGT
TAATGTTTCGATTAAGTGCT

Product: RNA-binding S1 domain-containing protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MQGSSVSKALVTPGEELGVEEEYLPGDNAYVDSGYVKSMVLGIAEWDRVNHVVNVKPLKLSLIRPGQIVYGKVYYFPNDK
VAMVRIFAVQHQDGVRRIQAETGILYVTYASEERLSTIYDAVGLGDLIKARVLSSKPPYHISLRGPLLGVVETRCPQCRA
VIVPSTSSKITCPVCGFVFRRKVAAS

Sequences:

>Translated_186_residues
MQGSSVSKALVTPGEELGVEEEYLPGDNAYVDSGYVKSMVLGIAEWDRVNHVVNVKPLKLSLIRPGQIVYGKVYYFPNDK
VAMVRIFAVQHQDGVRRIQAETGILYVTYASEERLSTIYDAVGLGDLIKARVLSSKPPYHISLRGPLLGVVETRCPQCRA
VIVPSTSSKITCPVCGFVFRRKVAAS
>Mature_186_residues
MQGSSVSKALVTPGEELGVEEEYLPGDNAYVDSGYVKSMVLGIAEWDRVNHVVNVKPLKLSLIRPGQIVYGKVYYFPNDK
VAMVRIFAVQHQDGVRRIQAETGILYVTYASEERLSTIYDAVGLGDLIKARVLSSKPPYHISLRGPLLGVVETRCPQCRA
VIVPSTSSKITCPVCGFVFRRKVAAS

Specific function: Unknown

COG id: COG1096

COG function: function code J; Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20431; Mature: 20431

Theoretical pI: Translated: 9.09; Mature: 9.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQGSSVSKALVTPGEELGVEEEYLPGDNAYVDSGYVKSMVLGIAEWDRVNHVVNVKPLKL
CCCCCCCCEECCCCHHHCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHCCEEEECCEEEE
SLIRPGQIVYGKVYYFPNDKVAMVRIFAVQHQDGVRRIQAETGILYVTYASEERLSTIYD
EEECCCEEEEEEEEEECCCCEEEEEEEEEECCCCHHEEECCCCEEEEEECCCHHHHHHHH
AVGLGDLIKARVLSSKPPYHISLRGPLLGVVETRCPQCRAVIVPSTSSKITCPVCGFVFR
HHCHHHHHHHHHHCCCCCEEEEECCCEEEEECCCCCCCEEEEEECCCCEEECHHHHHHHH
RKVAAS
HHHCCC
>Mature Secondary Structure
MQGSSVSKALVTPGEELGVEEEYLPGDNAYVDSGYVKSMVLGIAEWDRVNHVVNVKPLKL
CCCCCCCCEECCCCHHHCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHCCEEEECCEEEE
SLIRPGQIVYGKVYYFPNDKVAMVRIFAVQHQDGVRRIQAETGILYVTYASEERLSTIYD
EEECCCEEEEEEEEEECCCCEEEEEEEEEECCCCHHEEECCCCEEEEEECCCHHHHHHHH
AVGLGDLIKARVLSSKPPYHISLRGPLLGVVETRCPQCRAVIVPSTSSKITCPVCGFVFR
HHCHHHHHHHHHHCCCCCEEEEECCCEEEEECCCCCCCEEEEEECCCCEEECHHHHHHHH
RKVAAS
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA