| Definition | Caldivirga maquilingensis IC-167 chromosome, complete genome. |
|---|---|
| Accession | NC_009954 |
| Length | 2,077,567 |
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The map label for this gene is yhjX [C]
Identifier: 159041087
GI number: 159041087
Start: 539752
End: 540891
Strand: Reverse
Name: yhjX [C]
Synonym: Cmaq_0504
Alternate gene names: 159041087
Gene position: 540891-539752 (Counterclockwise)
Preceding gene: 159041088
Following gene: 159041086
Centisome position: 26.03
GC content: 43.68
Gene sequence:
>1140_bases ATGAGGAACTGGTTCATAATAATCCAAGGACTATTACCAATGATGCTTATATCAGCCTACCAATACAGCTGGAACCTACT CATAACACCATTAATGAGGAGTCTCAACGTTGATTTACCTGCAATTCAAGTAGCCTACTCATTATTCGTCCTATTCTCCA CTATTTCACAGGTACTTGGGGGTTACATTGCTGATAGGAGAGGGCCTAGATTAGTTGGCGTAACCGGTGGTGTATTGGCT GGCTTAGGTATGGTGGCTTCACCACTTGTTAATGGGGTTAATCAATTCTACGCCCTGTGGTCAATGGGGAGCATTGGCGT TGGCTTAATCTACGGTGTATCAATAAACCTGGGGGTTAAGTGGTTTAGTAGGACTAGGGGCTTAGCCACAGGTATAATAA ACATGGGCTTTGGACTTGGGGCGACATTCTTCAACCCGTTAATATCGCTATTAATTATTAAGGGTGAGTACAGGTACCCG ATGATGCTTATAGGCGCATTAATACTGGCCGTAGTCATACCCTTAATGGCGACGGCCAAGTACCCTCCAAGCCAGGTTAA GGCTATGAGGCTTACTAAAATACCCCCAGGCTTCTGGCTTGTCTTCGCATCATTCTCACTAATGGGTATTCCACTTCAAT TACTCTCCTCCAGTCTCTCAATACTGGGTGAGGGTTACGGTTACATTATAGTTGCCACTGCGGCGTCACTACTTCCCCTA TTCAGTGGTATTGGTAGGCCAATAATGGGTTCAATATCAGATAAGTTAAGTAGGAGGAAGACTATTCTCGTAACTGGTGT CGCCTTAACGGTCTCAATGCTCACTCTGCTTATTCACTCACCCATAGCTTACATGGCCTCAACAGTAATTACAGGTATTT TCGGGGGTTCGGTGATAACGTTATTCGCATCCCTTGTGGGTGATGAATACGGTACAGTTAACTCAACCTTCCTATTCGGT ATACTTTACAATGGTAAATTCGTATCAGCCCTAATAAGTAGTGTAGTATTCGCTGAACTACTGAGGACCATTAATTTAAC TAACTCCCTTATAATTGAGGCTTTCCTAACAGCCGTATCAATACTAGTATTCATGGTCTTCACCAGGGTTAAGTCTAGGA GGCAGGTGGCTATTATTTGA
Upstream 100 bases:
>100_bases AGGGTGATTCCCTTACCCTAACCATACCACCCAACCTGATTCACCTAATACCGGCTGTTGAGTGAATACTGTTTAATAGG GTTAGGCTGGGGTTTTAACA
Downstream 100 bases:
>100_bases AAAACACTTAATAATGCGCCTTCACGGGTCCTGTATGGACTCTAGCAAGGTATTAAATATTGCTGGTTACGTTGCCTTAA CAGTAATCTTAATTTACCTA
Product: major facilitator transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 379; Mature: 379
Protein sequence:
>379_residues MRNWFIIIQGLLPMMLISAYQYSWNLLITPLMRSLNVDLPAIQVAYSLFVLFSTISQVLGGYIADRRGPRLVGVTGGVLA GLGMVASPLVNGVNQFYALWSMGSIGVGLIYGVSINLGVKWFSRTRGLATGIINMGFGLGATFFNPLISLLIIKGEYRYP MMLIGALILAVVIPLMATAKYPPSQVKAMRLTKIPPGFWLVFASFSLMGIPLQLLSSSLSILGEGYGYIIVATAASLLPL FSGIGRPIMGSISDKLSRRKTILVTGVALTVSMLTLLIHSPIAYMASTVITGIFGGSVITLFASLVGDEYGTVNSTFLFG ILYNGKFVSALISSVVFAELLRTINLTNSLIIEAFLTAVSILVFMVFTRVKSRRQVAII
Sequences:
>Translated_379_residues MRNWFIIIQGLLPMMLISAYQYSWNLLITPLMRSLNVDLPAIQVAYSLFVLFSTISQVLGGYIADRRGPRLVGVTGGVLA GLGMVASPLVNGVNQFYALWSMGSIGVGLIYGVSINLGVKWFSRTRGLATGIINMGFGLGATFFNPLISLLIIKGEYRYP MMLIGALILAVVIPLMATAKYPPSQVKAMRLTKIPPGFWLVFASFSLMGIPLQLLSSSLSILGEGYGYIIVATAASLLPL FSGIGRPIMGSISDKLSRRKTILVTGVALTVSMLTLLIHSPIAYMASTVITGIFGGSVITLFASLVGDEYGTVNSTFLFG ILYNGKFVSALISSVVFAELLRTINLTNSLIIEAFLTAVSILVFMVFTRVKSRRQVAII >Mature_379_residues MRNWFIIIQGLLPMMLISAYQYSWNLLITPLMRSLNVDLPAIQVAYSLFVLFSTISQVLGGYIADRRGPRLVGVTGGVLA GLGMVASPLVNGVNQFYALWSMGSIGVGLIYGVSINLGVKWFSRTRGLATGIINMGFGLGATFFNPLISLLIIKGEYRYP MMLIGALILAVVIPLMATAKYPPSQVKAMRLTKIPPGFWLVFASFSLMGIPLQLLSSSLSILGEGYGYIIVATAASLLPL FSGIGRPIMGSISDKLSRRKTILVTGVALTVSMLTLLIHSPIAYMASTVITGIFGGSVITLFASLVGDEYGTVNSTFLFG ILYNGKFVSALISSVVFAELLRTINLTNSLIIEAFLTAVSILVFMVFTRVKSRRQVAII
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1789969, Length=345, Percent_Identity=25.7971014492754, Blast_Score=71, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 - InterPro: IPR004741 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 40849; Mature: 40849
Theoretical pI: Translated: 10.66; Mature: 10.66
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRNWFIIIQGLLPMMLISAYQYSWNLLITPLMRSLNVDLPAIQVAYSLFVLFSTISQVLG CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH GYIADRRGPRLVGVTGGVLAGLGMVASPLVNGVNQFYALWSMGSIGVGLIYGVSINLGVK HHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEEECCHH WFSRTRGLATGIINMGFGLGATFFNPLISLLIIKGEYRYPMMLIGALILAVVIPLMATAK HHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC YPPSQVKAMRLTKIPPGFWLVFASFSLMGIPLQLLSSSLSILGEGYGYIIVATAASLLPL CCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEHHHHHHHHHH FSGIGRPIMGSISDKLSRRKTILVTGVALTVSMLTLLIHSPIAYMASTVITGIFGGSVIT HHHCCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH LFASLVGDEYGTVNSTFLFGILYNGKFVSALISSVVFAELLRTINLTNSLIIEAFLTAVS HHHHHHCCCCCCCCHHEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ILVFMVFTRVKSRRQVAII HHHHHHHHHHHCCCCEECC >Mature Secondary Structure MRNWFIIIQGLLPMMLISAYQYSWNLLITPLMRSLNVDLPAIQVAYSLFVLFSTISQVLG CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH GYIADRRGPRLVGVTGGVLAGLGMVASPLVNGVNQFYALWSMGSIGVGLIYGVSINLGVK HHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEEECCHH WFSRTRGLATGIINMGFGLGATFFNPLISLLIIKGEYRYPMMLIGALILAVVIPLMATAK HHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC YPPSQVKAMRLTKIPPGFWLVFASFSLMGIPLQLLSSSLSILGEGYGYIIVATAASLLPL CCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEHHHHHHHHHH FSGIGRPIMGSISDKLSRRKTILVTGVALTVSMLTLLIHSPIAYMASTVITGIFGGSVIT HHHCCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH LFASLVGDEYGTVNSTFLFGILYNGKFVSALISSVVFAELLRTINLTNSLIIEAFLTAVS HHHHHHCCCCCCCCHHEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ILVFMVFTRVKSRRQVAII HHHHHHHHHHHCCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2439991 [H]