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The map label for this gene is ydcM [C]

Identifier: 159040988

GI number: 159040988

Start: 440014

End: 441303

Strand: Reverse

Name: ydcM [C]

Synonym: Cmaq_0405

Alternate gene names: 159040988

Gene position: 441303-440014 (Counterclockwise)

Preceding gene: 159040991

Following gene: 159040985

Centisome position: 21.24

GC content: 42.95

Gene sequence:

>1290_bases
ATGAAGAGGAGTAACATTGTTAAACTGATTGTGGATGAAGAGACTAAGAAGAGGTTGCTTGGTCTATTGGAAGTGTATAG
GGCTTGTTGGAATACTGTTAATTGGCTTAGGATGCAGCAGTTTAAAAACCATGAAAGAGTGGGCTTCGGAGAGACCGAGA
AAGAAACATATGAGAAGTTTAAGCGAATCCTAAAAGTCAATGCACAGCAGGTTACTAGGAAGAATGCTGAGGCTTGGCGT
TCATTTTTCGCTTTAATAAAAGAGAAGAGGCAAAACAAGAACTTAAAGCCAAGACCGCCGGGCTATTGGAAGCAAGGCAT
CATTCTTGTTAGAAATGATAGGTACACTATTGATGAGGAGAAACGTGAGATTTACCTTAAGGACTTCAAGATGAGGTTAA
AGTACGCCGGTAAGTTGAAATGGAAAGGGAAACAAGGCAGACTTGAAATACATTATGATGAAGTTAGGGGGAGGTTTTAC
GCATTCATACCAATGAGTGTTGAGGACGTTAAACCAAAGGAGAGTGGATTAAAGGCATCTATTGATTTAGGGATAGTGAA
CTTAGTAACAATGTTCATAGAGAATGGAAAATGGTTTCTCTTCAAAGGTGGTTCTATTCTCTCACAGTACGAGTATTATA
GCAAAAAGATAGCCATAACACAGAAGAAATTAGCCTTGCATGGGCAGAGGAGGAGTAGGAGATTAAGCATGTTATATAGG
AAAAGAAGCCTATTCATGAGGCACGTAGTAAATTCAATGGTGAGGAGGATAATGAATATACTTAGTAAAGAGGGGGTTAT
AGAGGTTAGAGTTGGTTACCCTAAGGAGATTACAAAGAACCATGGGAATAAACTAACTGTGAACTTCTGGAATTATAGGC
TCATTATACGAAGGTTGAAAGAGGTTGGTGAGGAGTTGGGGATTAAGGTTATTGAGGTTAATGAAGCGTACACATCTAAA
ACATGCACCCTATGCGGGGAAACTCACCCAAATGGTAGGATTCACCGTGGCTTATTCAAGTGTCCCCGCATGGGGAAGGT
AATTAATGCTGACTTGAATGCGGCAGTAAACATACTACGCATGCACATATCCCCAAGTCCCAGTGAGGCGGGTGTTGGGG
GCTACTCCCGTGGAGGGATAGGGGTAATTGGGTTGAAGACCCAGCCCGTGGTCTACCGCTGGACGAACGGAGCGGGGTGG
AGGTCATCCTCCACCAGCAATGAAGCGATGAGGATGAAGGCGGTAAACCACAAACCAATGAACCACCCAAAGGGAAACCC
CACCCTTTAA

Upstream 100 bases:

>100_bases
TGACAAAATGAACGACAAGTTTCACCTTTCTAAGGCGGGGTAAAGCTTTTAAAGTTTCAGATGAGGTAATTAAGAAGTAT
TATAGGGAAATAGTGGGAGA

Downstream 100 bases:

>100_bases
GACGGGGAGGAGGTCAGCTAGTTAATATCACCACACGCCTATTGAAACTCCCCCTCTGTCCCTCGTAAACAGCCTTAGTG
TGCATTAATGGGTAGGCGTT

Product: IS605 family transposase OrfB

Products: NA

Alternate protein names: IS Element ISTsi3 OrfB Probably Transposase; Transposase ISC; Neutral Protease; Transposase And Inactivated Derivatives; C-Terminal Of Inactivated Transposase; ISChy8 Transposase; IS Element ISDka2 OrfB; Transposase Family Protein; Transposase IS; Transposase Family; IS Element ISTsi2 OrfB Probably Transposase

Number of amino acids: Translated: 429; Mature: 429

Protein sequence:

>429_residues
MKRSNIVKLIVDEETKKRLLGLLEVYRACWNTVNWLRMQQFKNHERVGFGETEKETYEKFKRILKVNAQQVTRKNAEAWR
SFFALIKEKRQNKNLKPRPPGYWKQGIILVRNDRYTIDEEKREIYLKDFKMRLKYAGKLKWKGKQGRLEIHYDEVRGRFY
AFIPMSVEDVKPKESGLKASIDLGIVNLVTMFIENGKWFLFKGGSILSQYEYYSKKIAITQKKLALHGQRRSRRLSMLYR
KRSLFMRHVVNSMVRRIMNILSKEGVIEVRVGYPKEITKNHGNKLTVNFWNYRLIIRRLKEVGEELGIKVIEVNEAYTSK
TCTLCGETHPNGRIHRGLFKCPRMGKVINADLNAAVNILRMHISPSPSEAGVGGYSRGGIGVIGLKTQPVVYRWTNGAGW
RSSSTSNEAMRMKAVNHKPMNHPKGNPTL

Sequences:

>Translated_429_residues
MKRSNIVKLIVDEETKKRLLGLLEVYRACWNTVNWLRMQQFKNHERVGFGETEKETYEKFKRILKVNAQQVTRKNAEAWR
SFFALIKEKRQNKNLKPRPPGYWKQGIILVRNDRYTIDEEKREIYLKDFKMRLKYAGKLKWKGKQGRLEIHYDEVRGRFY
AFIPMSVEDVKPKESGLKASIDLGIVNLVTMFIENGKWFLFKGGSILSQYEYYSKKIAITQKKLALHGQRRSRRLSMLYR
KRSLFMRHVVNSMVRRIMNILSKEGVIEVRVGYPKEITKNHGNKLTVNFWNYRLIIRRLKEVGEELGIKVIEVNEAYTSK
TCTLCGETHPNGRIHRGLFKCPRMGKVINADLNAAVNILRMHISPSPSEAGVGGYSRGGIGVIGLKTQPVVYRWTNGAGW
RSSSTSNEAMRMKAVNHKPMNHPKGNPTL
>Mature_429_residues
MKRSNIVKLIVDEETKKRLLGLLEVYRACWNTVNWLRMQQFKNHERVGFGETEKETYEKFKRILKVNAQQVTRKNAEAWR
SFFALIKEKRQNKNLKPRPPGYWKQGIILVRNDRYTIDEEKREIYLKDFKMRLKYAGKLKWKGKQGRLEIHYDEVRGRFY
AFIPMSVEDVKPKESGLKASIDLGIVNLVTMFIENGKWFLFKGGSILSQYEYYSKKIAITQKKLALHGQRRSRRLSMLYR
KRSLFMRHVVNSMVRRIMNILSKEGVIEVRVGYPKEITKNHGNKLTVNFWNYRLIIRRLKEVGEELGIKVIEVNEAYTSK
TCTLCGETHPNGRIHRGLFKCPRMGKVINADLNAAVNILRMHISPSPSEAGVGGYSRGGIGVIGLKTQPVVYRWTNGAGW
RSSSTSNEAMRMKAVNHKPMNHPKGNPTL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 49909; Mature: 49909

Theoretical pI: Translated: 10.89; Mature: 10.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRSNIVKLIVDEETKKRLLGLLEVYRACWNTVNWLRMQQFKNHERVGFGETEKETYEKF
CCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
KRILKVNAQQVTRKNAEAWRSFFALIKEKRQNKNLKPRPPGYWKQGIILVRNDRYTIDEE
HHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCH
KREIYLKDFKMRLKYAGKLKWKGKQGRLEIHYDEVRGRFYAFIPMSVEDVKPKESGLKAS
HHHHHHHHHHHHHHHCCEEEECCCCCCEEEEEHHHCCEEEEEEECCHHCCCCCCCCCEEE
IDLGIVNLVTMFIENGKWFLFKGGSILSQYEYYSKKIAITQKKLALHGQRRSRRLSMLYR
EHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHEEEHHHHHHHCHHHHHHHHHHHH
KRSLFMRHVVNSMVRRIMNILSKEGVIEVRVGYPKEITKNHGNKLTVNFWNYRLIIRRLK
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCEEEEEEHHHHHHHHHHH
EVGEELGIKVIEVNEAYTSKTCTLCGETHPNGRIHRGLFKCPRMGKVINADLNAAVNILR
HHHHHHCEEEEEECCCCCCCEEEEECCCCCCCCCHHHHHCCCCCCCEECCCHHHHEEEEE
MHISPSPSEAGVGGYSRGGIGVIGLKTQPVVYRWTNGAGWRSSSTSNEAMRMKAVNHKPM
EECCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCHHHEEHHCCCCCC
NHPKGNPTL
CCCCCCCCC
>Mature Secondary Structure
MKRSNIVKLIVDEETKKRLLGLLEVYRACWNTVNWLRMQQFKNHERVGFGETEKETYEKF
CCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
KRILKVNAQQVTRKNAEAWRSFFALIKEKRQNKNLKPRPPGYWKQGIILVRNDRYTIDEE
HHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCH
KREIYLKDFKMRLKYAGKLKWKGKQGRLEIHYDEVRGRFYAFIPMSVEDVKPKESGLKAS
HHHHHHHHHHHHHHHCCEEEECCCCCCEEEEEHHHCCEEEEEEECCHHCCCCCCCCCEEE
IDLGIVNLVTMFIENGKWFLFKGGSILSQYEYYSKKIAITQKKLALHGQRRSRRLSMLYR
EHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHEEEHHHHHHHCHHHHHHHHHHHH
KRSLFMRHVVNSMVRRIMNILSKEGVIEVRVGYPKEITKNHGNKLTVNFWNYRLIIRRLK
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCEEEEEEHHHHHHHHHHH
EVGEELGIKVIEVNEAYTSKTCTLCGETHPNGRIHRGLFKCPRMGKVINADLNAAVNILR
HHHHHHCEEEEEECCCCCCCEEEEECCCCCCCCCHHHHHCCCCCCCEECCCHHHHEEEEE
MHISPSPSEAGVGGYSRGGIGVIGLKTQPVVYRWTNGAGWRSSSTSNEAMRMKAVNHKPM
EECCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCHHHEEHHCCCCCC
NHPKGNPTL
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA