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The map label for this gene is rps6e

Identifier: 159040722

GI number: 159040722

Start: 159589

End: 160041

Strand: Reverse

Name: rps6e

Synonym: Cmaq_0134

Alternate gene names: 159040722

Gene position: 160041-159589 (Counterclockwise)

Preceding gene: 159040723

Following gene: 159040718

Centisome position: 7.7

GC content: 47.02

Gene sequence:

>453_bases
ATGCCAACCTTTAAGCTAGTGTTAAGTGACCCAAGGAGCGGTAAGTCTAAGCAACTTGAGGTTAAGGATGAGGTGGCCCA
GAGGCTAATAGGGTTAAGGATAGGGGATGTGTTTGATGCTCAATTAATTAAGGAGATTATTGATCTACCGCAGGGCTTTA
GAATTAAGATAACTGGAGGCACTGGGTACGATGGGGCACCAATGCACCCAGGCATAGAGGGGCCTGTGAAGAAGTATGCC
CTCCTCTCCGGTAGGCCAGGCTTTAGGCCTGAGAAGAAGGGATTAAGGGTGAGGAGATTAATTAGGGGTAATACTATTAG
TGACCAAATTGTTCAAGTTAACGCAGTCTTAGTTTACCCTGAAAATTGGGATAAGGAACCCGTAATTCAGGTTAGTGGGG
AGGCCAAGCCTACTGAAGCCAAGGCCGAGGAAAAAGCTGAGGCGGCTCAATAA

Upstream 100 bases:

>100_bases
TTAACTCAATAATGTACCTAAACCCATGCATCTACCCCTCTAGAGGATGGAGCCTTAAGTACGTGGTAAAGTTTAAAAAA
TAAGCATGTAGCGTCGCGTA

Downstream 100 bases:

>100_bases
AATATTAAGTAAATGCATCACATCAGCTACCTGATGCCTTATTAATCAACACGGCTATCTTACTGTAATTTAATGCATTA
AGGCCTGTTAAGTATCCCAC

Product: 30S ribosomal protein S6e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 149

Protein sequence:

>150_residues
MPTFKLVLSDPRSGKSKQLEVKDEVAQRLIGLRIGDVFDAQLIKEIIDLPQGFRIKITGGTGYDGAPMHPGIEGPVKKYA
LLSGRPGFRPEKKGLRVRRLIRGNTISDQIVQVNAVLVYPENWDKEPVIQVSGEAKPTEAKAEEKAEAAQ

Sequences:

>Translated_150_residues
MPTFKLVLSDPRSGKSKQLEVKDEVAQRLIGLRIGDVFDAQLIKEIIDLPQGFRIKITGGTGYDGAPMHPGIEGPVKKYA
LLSGRPGFRPEKKGLRVRRLIRGNTISDQIVQVNAVLVYPENWDKEPVIQVSGEAKPTEAKAEEKAEAAQ
>Mature_149_residues
PTFKLVLSDPRSGKSKQLEVKDEVAQRLIGLRIGDVFDAQLIKEIIDLPQGFRIKITGGTGYDGAPMHPGIEGPVKKYAL
LSGRPGFRPEKKGLRVRRLIRGNTISDQIVQVNAVLVYPENWDKEPVIQVSGEAKPTEAKAEEKAEAAQ

Specific function: Unknown

COG id: COG2125

COG function: function code J; Ribosomal protein S6E (S10)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S6e family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RS6E_CALMQ (A8MA52)

Other databases:

- EMBL:   CP000852
- RefSeq:   YP_001539974.1
- GeneID:   5709224
- GenomeReviews:   CP000852_GR
- KEGG:   cma:Cmaq_0134
- HOGENOM:   HBG497422
- OMA:   DGFPMRP
- ProtClustDB:   PRK04290
- BioCyc:   CMAQ397948:CMAQ_0134-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00512
- InterPro:   IPR001377
- InterPro:   IPR020924
- InterPro:   IPR018282
- PANTHER:   PTHR11502
- PANTHER:   PTHR11502:SF2

Pfam domain/function: PF01092 Ribosomal_S6e

EC number: NA

Molecular weight: Translated: 16515; Mature: 16384

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: PS00578 RIBOSOMAL_S6E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTFKLVLSDPRSGKSKQLEVKDEVAQRLIGLRIGDVFDAQLIKEIIDLPQGFRIKITGG
CCCEEEEEECCCCCCCCEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEEECC
TGYDGAPMHPGIEGPVKKYALLSGRPGFRPEKKGLRVRRLIRGNTISDQIVQVNAVLVYP
CCCCCCCCCCCCCCCHHHHEEECCCCCCCCCHHCHHHHHHHCCCCCCCCEEEEEEEEEEC
ENWDKEPVIQVSGEAKPTEAKAEEKAEAAQ
CCCCCCCEEEECCCCCCCCHHHHHHHHCCC
>Mature Secondary Structure 
PTFKLVLSDPRSGKSKQLEVKDEVAQRLIGLRIGDVFDAQLIKEIIDLPQGFRIKITGG
CCEEEEEECCCCCCCCEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEEECC
TGYDGAPMHPGIEGPVKKYALLSGRPGFRPEKKGLRVRRLIRGNTISDQIVQVNAVLVYP
CCCCCCCCCCCCCCCHHHHEEECCCCCCCCCHHCHHHHHHHCCCCCCCCEEEEEEEEEEC
ENWDKEPVIQVSGEAKPTEAKAEEKAEAAQ
CCCCCCCEEEECCCCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA