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The map label for this gene is ycdK [C]

Identifier: 159040623

GI number: 159040623

Start: 46552

End: 46959

Strand: Reverse

Name: ycdK [C]

Synonym: Cmaq_0031

Alternate gene names: 159040623

Gene position: 46959-46552 (Counterclockwise)

Preceding gene: 159040626

Following gene: 159040619

Centisome position: 2.26

GC content: 41.18

Gene sequence:

>408_bases
ATGTGTGATACGCTTAAAAACAAGTATTACCCAGTGCCCTTGATGATTAGGAATATTGATGTAGAGGGATTACCTAAGGC
TGGTCCATACTCCCATGCAGTGATTGCCAATGGGTTAGTCTTCGTATCAGGGCAGTTGGGTACTATTCCAGGTAAGGATT
TGCCCTTTGAGGAGCAGTTTAGGAATGCTGTTAATAAAATTAGCAAAATACTGGCTGAGGCTGGTTCATCATTAGATAAT
GTTGTTAAGGTCACTGTTTACTTAGCTGATGCCAAGTACTTTGATGCAATGAATAAGTTATTCAGCGAGTACTTTAGGGG
TAGGCCTGCTAGAACCACTGTTGTTACCGGTATGATTGATTCAAGGGCATTGGTTGAAGTTGATGTAATCGCTGTTGTTA
AGGGTTAG

Upstream 100 bases:

>100_bases
TCACTTAAAATCACCTAATAATTTTAAATGATAATTCATATCTTTTTAAGCTTAAATCCATTATACTTCACTTAATTCCC
CATCACTGTTTTCATGCATT

Downstream 100 bases:

>100_bases
TTGAAATTACTCAAATCCCTTATAGCCCTGTGTTAAAACCCCCTTGATGCCTGGCTTAATGATAGTGTATTTTTCACCTA
TTAAGTCATCAATAAGATTC

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 135; Mature: 135

Protein sequence:

>135_residues
MCDTLKNKYYPVPLMIRNIDVEGLPKAGPYSHAVIANGLVFVSGQLGTIPGKDLPFEEQFRNAVNKISKILAEAGSSLDN
VVKVTVYLADAKYFDAMNKLFSEYFRGRPARTTVVTGMIDSRALVEVDVIAVVKG

Sequences:

>Translated_135_residues
MCDTLKNKYYPVPLMIRNIDVEGLPKAGPYSHAVIANGLVFVSGQLGTIPGKDLPFEEQFRNAVNKISKILAEAGSSLDN
VVKVTVYLADAKYFDAMNKLFSEYFRGRPARTTVVTGMIDSRALVEVDVIAVVKG
>Mature_135_residues
MCDTLKNKYYPVPLMIRNIDVEGLPKAGPYSHAVIANGLVFVSGQLGTIPGKDLPFEEQFRNAVNKISKILAEAGSSLDN
VVKVTVYLADAKYFDAMNKLFSEYFRGRPARTTVVTGMIDSRALVEVDVIAVVKG

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=125, Percent_Identity=32, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1787245, Length=109, Percent_Identity=30.2752293577982, Blast_Score=63, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI71982075, Length=109, Percent_Identity=33.9449541284404, Blast_Score=63, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI71982068, Length=109, Percent_Identity=33.9449541284404, Blast_Score=63, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI25148896, Length=109, Percent_Identity=34.8623853211009, Blast_Score=63, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6322138, Length=116, Percent_Identity=38.7931034482759, Blast_Score=75, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 14769; Mature: 14769

Theoretical pI: Translated: 8.97; Mature: 8.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCDTLKNKYYPVPLMIRNIDVEGLPKAGPYSHAVIANGLVFVSGQLGTIPGKDLPFEEQF
CCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHCCEEEEECCCCCCCCCCCCHHHHH
RNAVNKISKILAEAGSSLDNVVKVTVYLADAKYFDAMNKLFSEYFRGRPARTTVVTGMID
HHHHHHHHHHHHHHCCCCCCEEEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEECCC
SRALVEVDVIAVVKG
CCEEEEEEEEEEECC
>Mature Secondary Structure
MCDTLKNKYYPVPLMIRNIDVEGLPKAGPYSHAVIANGLVFVSGQLGTIPGKDLPFEEQF
CCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHCCEEEEECCCCCCCCCCCCHHHHH
RNAVNKISKILAEAGSSLDNVVKVTVYLADAKYFDAMNKLFSEYFRGRPARTTVVTGMID
HHHHHHHHHHHHHHCCCCCCEEEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEECCC
SRALVEVDVIAVVKG
CCEEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]