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The map label for this gene is rpl18p

Identifier: 159040602

GI number: 159040602

Start: 23708

End: 24331

Strand: Reverse

Name: rpl18p

Synonym: Cmaq_0010

Alternate gene names: 159040602

Gene position: 24331-23708 (Counterclockwise)

Preceding gene: 159040603

Following gene: 159040601

Centisome position: 1.17

GC content: 47.76

Gene sequence:

>624_bases
ATGGCAAGCAGCGGTAGGTATAAGGTTAAGTTCAGGAGGAGGAGGGAGGGTAAGACTGATTACTATAAGAGGAGGATCAT
GGTAATAAGCGGTAAACCAAGGCTAGTTGTAAGATTCAGTAACCGCTACGTGCTGGCTCAGGTAATAGTATCAGCACCAC
AGGGCGACTTCACGGTGGCTGAGGCAAGCAGTAGGGAGTTGGTTAAGAAGTTTGGTTGGCTTGGTGGAACCGGGAATACA
CCTGCAGCGTACTTAGTGGGTTTACTCATTGGGTATAGGGCGTTATCAAAGGGCATTAAGTTAGCTGTACTGGACGTTGG
GCTACATAGGGTCACTAAGGGTGGTAGATTATTCGCAGTGGTTAAGGGCGCCGTGGATGCTGGATTAGAGGTGCCTCATG
ATGAGGAAGTCCAACCAAGTGAGGATAGGTTAAATGGGGAGCATATCGCCCAATACGCCGCAGACTTAAAGCAATCCAAC
CCGGAACTCTATAAAATAAGGTTCTCCAAGTACCTTGCAAGGGGTCTTGAACCTGAAAACATAAGCAAGCACATTGAGGA
GGTTAAATCAAAGATCATGGAGAAGTACGCTAAGAGTGAAGCCAAGGCGGAGGATTCACAGTAG

Upstream 100 bases:

>100_bases
GAGGCTACTTCGAGTCACTGGCTCACTTGAGAACATACATGATTCAGAATGGAATCGTCACTGAGGATAAGATTAAGGCA
GCCTTCAAGGGTGGTTCCTA

Downstream 100 bases:

>100_bases
TAACCCTCACCTCAATCCCTGATTCCAACATACTCCAGTCCCAATGGCCTAGTTGCAATTCCTCTAGGGCTAATTCATAA
CCAGGTGCTTCAAGGGTGCT

Product: 50S ribosomal protein L18P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 206

Protein sequence:

>207_residues
MASSGRYKVKFRRRREGKTDYYKRRIMVISGKPRLVVRFSNRYVLAQVIVSAPQGDFTVAEASSRELVKKFGWLGGTGNT
PAAYLVGLLIGYRALSKGIKLAVLDVGLHRVTKGGRLFAVVKGAVDAGLEVPHDEEVQPSEDRLNGEHIAQYAADLKQSN
PELYKIRFSKYLARGLEPENISKHIEEVKSKIMEKYAKSEAKAEDSQ

Sequences:

>Translated_207_residues
MASSGRYKVKFRRRREGKTDYYKRRIMVISGKPRLVVRFSNRYVLAQVIVSAPQGDFTVAEASSRELVKKFGWLGGTGNT
PAAYLVGLLIGYRALSKGIKLAVLDVGLHRVTKGGRLFAVVKGAVDAGLEVPHDEEVQPSEDRLNGEHIAQYAADLKQSN
PELYKIRFSKYLARGLEPENISKHIEEVKSKIMEKYAKSEAKAEDSQ
>Mature_206_residues
ASSGRYKVKFRRRREGKTDYYKRRIMVISGKPRLVVRFSNRYVLAQVIVSAPQGDFTVAEASSRELVKKFGWLGGTGNTP
AAYLVGLLIGYRALSKGIKLAVLDVGLHRVTKGGRLFAVVKGAVDAGLEVPHDEEVQPSEDRLNGEHIAQYAADLKQSNP
ELYKIRFSKYLARGLEPENISKHIEEVKSKIMEKYAKSEAKAEDSQ

Specific function: This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance

COG id: COG0256

COG function: function code J; Ribosomal protein L18

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L18P family

Homologues:

Organism=Homo sapiens, GI14591909, Length=236, Percent_Identity=32.2033898305085, Blast_Score=108, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI17534333, Length=234, Percent_Identity=38.034188034188, Blast_Score=136, Evalue=7e-33,
Organism=Saccharomyces cerevisiae, GI6325126, Length=227, Percent_Identity=35.6828193832599, Blast_Score=120, Evalue=1e-28,
Organism=Drosophila melanogaster, GI116007384, Length=223, Percent_Identity=34.5291479820628, Blast_Score=120, Evalue=7e-28,
Organism=Drosophila melanogaster, GI116007382, Length=223, Percent_Identity=34.5291479820628, Blast_Score=120, Evalue=7e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL18_CALMQ (A8M9I3)

Other databases:

- EMBL:   CP000852
- RefSeq:   YP_001539854.1
- ProteinModelPortal:   A8M9I3
- SMR:   A8M9I3
- GeneID:   5710304
- GenomeReviews:   CP000852_GR
- KEGG:   cma:Cmaq_0010
- HOGENOM:   HBG391676
- OMA:   GNTPSAY
- ProtClustDB:   PRK08569
- BioCyc:   CMAQ397948:CMAQ_0010-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01337_A
- InterPro:   IPR005484
- InterPro:   IPR005485
- PANTHER:   PTHR23410

Pfam domain/function: PF00861 Ribosomal_L18p

EC number: NA

Molecular weight: Translated: 23127; Mature: 22996

Theoretical pI: Translated: 10.37; Mature: 10.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASSGRYKVKFRRRREGKTDYYKRRIMVISGKPRLVVRFSNRYVLAQVIVSAPQGDFTVA
CCCCCCEEEEEECCCCCCCCHHHEEEEEECCCCEEEEEECCCEEEEHHHHHCCCCCEEEE
EASSRELVKKFGWLGGTGNTPAAYLVGLLIGYRALSKGIKLAVLDVGLHRVTKGGRLFAV
CCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHCCCCEEEEE
VKGAVDAGLEVPHDEEVQPSEDRLNGEHIAQYAADLKQSNPELYKIRFSKYLARGLEPEN
EECHHHCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHCCCCEEEHHHHHHHHCCCCCCH
ISKHIEEVKSKIMEKYAKSEAKAEDSQ
HHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
ASSGRYKVKFRRRREGKTDYYKRRIMVISGKPRLVVRFSNRYVLAQVIVSAPQGDFTVA
CCCCCEEEEEECCCCCCCCHHHEEEEEECCCCEEEEEECCCEEEEHHHHHCCCCCEEEE
EASSRELVKKFGWLGGTGNTPAAYLVGLLIGYRALSKGIKLAVLDVGLHRVTKGGRLFAV
CCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHCCCCEEEEE
VKGAVDAGLEVPHDEEVQPSEDRLNGEHIAQYAADLKQSNPELYKIRFSKYLARGLEPEN
EECHHHCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHCCCCEEEHHHHHHHHCCCCCCH
ISKHIEEVKSKIMEKYAKSEAKAEDSQ
HHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA