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The map label for this gene is ymdB [C]

Identifier: 15899613

GI number: 15899613

Start: 2651810

End: 2652343

Strand: Reverse

Name: ymdB [C]

Synonym: SSO2899

Alternate gene names: 15899613

Gene position: 2652343-2651810 (Counterclockwise)

Preceding gene: 15899616

Following gene: 15899612

Centisome position: 88.64

GC content: 37.08

Gene sequence:

>534_bases
ATGTACAAGAATCCATATGGCCTTGAAATTTACCTTATTAAAGGGGATATAACGGAAATCGAAGCTGATGCCATAGTTAA
CGCTGCTAATTCCTACCTACAACATGGTGGAGGTGTAGCTTACGCAATTGTTAGAAAGGGAGGTTATATAATTCAGAAGG
AAAGTGACGAATACGTTAAGAAATTCGGCCCAGTTCCGGTGGGGGAAGTTGCCGTTACTAGTGCAGGGAAGTTAAAAGCT
AAGTATGTTATTCACGCAGTAGGTCCAAGGTATGGAATAGAGGGAGAAGATAAGCTAGAATCGGCAATTTTCAAATCATT
GTTAAAGGCTGACGAATTATCCCTAAGCTCAATAGCTATGCCAGCTATTTCCACTGGAATTTATGGTTATCCATTTGAAA
TATGTGCTAGAATTATGGCTAATGTTCTAAAGGGTTATAAACCTAAAACCCTAAGGAAAGTTATGATATGTCTTTACACT
AAAGATGCATATGACGTTTTTAAAAGTATATTCAACTCGATTTTGAAAAACTAA

Upstream 100 bases:

>100_bases
TTTAGGAATACCATTAGAAGCTTAAGAAAATTGAATAGGTCCGCATAACACTACTAATAAAATGATTAAGGTATAAAATA
CCGAGAGAGGAAATCCACTT

Downstream 100 bases:

>100_bases
CTCTCAATACTGATTATGTTTTCAATTTTATATAAACCGAGGCATAGATACTGTACAGCTTAAAGTCCCGATTATTCTAT
ATAAGGAATATTGCTAGTAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 177; Mature: 177

Protein sequence:

>177_residues
MYKNPYGLEIYLIKGDITEIEADAIVNAANSYLQHGGGVAYAIVRKGGYIIQKESDEYVKKFGPVPVGEVAVTSAGKLKA
KYVIHAVGPRYGIEGEDKLESAIFKSLLKADELSLSSIAMPAISTGIYGYPFEICARIMANVLKGYKPKTLRKVMICLYT
KDAYDVFKSIFNSILKN

Sequences:

>Translated_177_residues
MYKNPYGLEIYLIKGDITEIEADAIVNAANSYLQHGGGVAYAIVRKGGYIIQKESDEYVKKFGPVPVGEVAVTSAGKLKA
KYVIHAVGPRYGIEGEDKLESAIFKSLLKADELSLSSIAMPAISTGIYGYPFEICARIMANVLKGYKPKTLRKVMICLYT
KDAYDVFKSIFNSILKN
>Mature_177_residues
MYKNPYGLEIYLIKGDITEIEADAIVNAANSYLQHGGGVAYAIVRKGGYIIQKESDEYVKKFGPVPVGEVAVTSAGKLKA
KYVIHAVGPRYGIEGEDKLESAIFKSLLKADELSLSSIAMPAISTGIYGYPFEICARIMANVLKGYKPKTLRKVMICLYT
KDAYDVFKSIFNSILKN

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain

Homologues:

Organism=Homo sapiens, GI226371718, Length=145, Percent_Identity=40.6896551724138, Blast_Score=116, Evalue=1e-26,
Organism=Homo sapiens, GI226371710, Length=145, Percent_Identity=40.6896551724138, Blast_Score=116, Evalue=1e-26,
Organism=Homo sapiens, GI226371706, Length=145, Percent_Identity=40.6896551724138, Blast_Score=116, Evalue=1e-26,
Organism=Homo sapiens, GI226371716, Length=145, Percent_Identity=40.6896551724138, Blast_Score=116, Evalue=1e-26,
Organism=Homo sapiens, GI226371714, Length=145, Percent_Identity=40.6896551724138, Blast_Score=116, Evalue=1e-26,
Organism=Homo sapiens, GI226371712, Length=145, Percent_Identity=40.6896551724138, Blast_Score=116, Evalue=1e-26,
Organism=Homo sapiens, GI13569840, Length=168, Percent_Identity=38.0952380952381, Blast_Score=98, Evalue=3e-21,
Organism=Homo sapiens, GI154813199, Length=184, Percent_Identity=32.6086956521739, Blast_Score=96, Evalue=1e-20,
Organism=Homo sapiens, GI117968621, Length=173, Percent_Identity=37.5722543352601, Blast_Score=94, Evalue=5e-20,
Organism=Homo sapiens, GI20336746, Length=154, Percent_Identity=31.8181818181818, Blast_Score=81, Evalue=4e-16,
Organism=Homo sapiens, GI165377137, Length=166, Percent_Identity=35.5421686746988, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI93141018, Length=157, Percent_Identity=29.9363057324841, Blast_Score=70, Evalue=7e-13,
Organism=Homo sapiens, GI93141020, Length=157, Percent_Identity=29.9363057324841, Blast_Score=70, Evalue=8e-13,
Organism=Homo sapiens, GI4758496, Length=157, Percent_Identity=29.9363057324841, Blast_Score=70, Evalue=8e-13,
Organism=Escherichia coli, GI1787283, Length=133, Percent_Identity=43.609022556391, Blast_Score=97, Evalue=6e-22,
Organism=Caenorhabditis elegans, GI17538214, Length=164, Percent_Identity=37.8048780487805, Blast_Score=89, Evalue=9e-19,
Organism=Drosophila melanogaster, GI24586353, Length=164, Percent_Identity=29.8780487804878, Blast_Score=70, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2899_SULSO (Q97UU4)

Other databases:

- EMBL:   AE006641
- PIR:   A99469
- RefSeq:   NP_344218.1
- ProteinModelPortal:   Q97UU4
- SMR:   Q97UU4
- GeneID:   1452927
- GenomeReviews:   AE006641_GR
- KEGG:   sso:SSO2899
- NMPDR:   fig|273057.1.peg.2641
- HOGENOM:   HBG682503
- OMA:   SAGIYGC
- ProtClustDB:   PRK00431
- BioCyc:   SSOL273057:SSO2899-MONOMER
- HAMAP:   MF_01205_A
- InterPro:   IPR002589
- InterPro:   IPR022942
- SMART:   SM00506

Pfam domain/function: PF01661 Macro

EC number: NA

Molecular weight: Translated: 19445; Mature: 19445

Theoretical pI: Translated: 9.29; Mature: 9.29

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKNPYGLEIYLIKGDITEIEADAIVNAANSYLQHGGGVAYAIVRKGGYIIQKESDEYVK
CCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEECCHHHHH
KFGPVPVGEVAVTSAGKLKAKYVIHAVGPRYGIEGEDKLESAIFKSLLKADELSLSSIAM
HCCCCCCCCEEECCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHH
PAISTGIYGYPFEICARIMANVLKGYKPKTLRKVMICLYTKDAYDVFKSIFNSILKN
HHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MYKNPYGLEIYLIKGDITEIEADAIVNAANSYLQHGGGVAYAIVRKGGYIIQKESDEYVK
CCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEECCHHHHH
KFGPVPVGEVAVTSAGKLKAKYVIHAVGPRYGIEGEDKLESAIFKSLLKADELSLSSIAM
HCCCCCCCCEEECCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHH
PAISTGIYGYPFEICARIMANVLKGYKPKTLRKVMICLYTKDAYDVFKSIFNSILKN
HHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11427726