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The map label for this gene is soxC-like [H]

Identifier: 15899522

GI number: 15899522

Start: 2565391

End: 2567019

Strand: Direct

Name: soxC-like [H]

Synonym: SSO2805

Alternate gene names: 15899522

Gene position: 2565391-2567019 (Clockwise)

Preceding gene: 15899521

Following gene: 15899523

Centisome position: 85.73

GC content: 37.32

Gene sequence:

>1629_bases
TTGACTTCATTTATTCTTATGAGCTCTAAATTATCAGATTGGTTTAAGGAGAGATTAGGACTAGATGATCTACCCTTCTT
CAGAACTCCAGATTATATGTATAAAGTAGACTATTGGCTAGGTGCGCTAGTAGCTTCTGCGTTCATTTACACCGTAATAA
CTGGGCTTATCCTTTTGTTATATTATAATGCCCAGGCTGGATACAATTCAACGGAGTTCGTCATAAATAGTGTACCATAT
GGTTCGGTTGTGCTTTACAGTCATTTATATGGTGCATATGCTATGATAATTCTAGCCTATATTCACATGTTTAGGAATTA
TTTCGCTGGAGCCTATAAGAAGCCTAGGGAACTATTATGGATAATTGGAGTTATAATGCTTATACTTACTTTGGGTACCG
CGTTCTTAGGATATAGTTTAATAGGTGATGCGTTGGCAACTAGTGCTGTGGATGTTGGAGAAGGTATAATTAGTAGTGTA
CCAGGACTTTCCATCTTTATTCCGTTTCTATTTGGGAATTATGATGCTGGGGATTACGGTAGGGTATTAGCATGGCACAT
AATACTTACCGCATTAATAGGCTTACTATTCGTCTTTCACTTCTTCTTAGCAGAACATTACGGAATGATGCCTTCTAGGA
AAGTTAAGGATAAAGTACCAGCGGTATACGCAAAAGAAGAGTGGCAGAAATTCAATCCATGGTGGCCTAGGAATTTCGTT
TATATGATGTCTTTAATATTCTTAACTTGGGGATTCATACTCATAATACCAAATGCCTTCGCATACCTTAATGGATTACC
ACAACAACTGAATCCATTCTTAAATCCAAAACCAGCTCCTCCACCAAACAGTCCAGCTGCTGCGCATATAACAACTTATC
CACCATGGTTCTTCTTGTTCTTATACAAGATAGCGGACTTCACGAGTGATGTAGTAATATTCTTATTTATTGGCGTGATT
ATTCCACTAATATATCTTATCATAGTGCCATTCTTGGATAGAACAGAATACTTGCATCCAATGAAGAGGAAGGTATTCGT
AGGGATAGGTATTCTAATTGTAACTTACTTAACACAAACAACCATATGGGGTGACTTAACACCTGGTGTAGAGATTCCAG
TTAGTCAACAAGTTTTAGTATATTTACCACCAGCAATAATAGTAGCTTTAGGGCTTGCTGCCATTAGACCAAAAACGGAT
AATAAAGGGAATATTAAAGGGACAATAGGTCCCATAACAGCATTAGCATTTATCTTAGTTTCATCTCTGTTTATCATAGC
TGGAATCGAGCTACTAGCTAACCCTACAATTTTAACGGTTGGAGTATTTATTCCTATTGCAGGAATATTTATACTAACTA
CTAAAAAGATTGCACCTATAGCACTAAATGCGGAACAAAGAAGTGAGAATGCATCAGTGAGTGAAGAAAGAGCACCAGAG
TGGAAGAAGAAACTGGCAGAAGGCTTAGTGGCATTGCTATTCATTTACGCAATAATATTGGCAGCGCAAATATGGACTAT
ACCAGCTACTGGATACTTCTCTAATTTATTTGGTATAGATTTAGGGCTAATCCTCCTAATGCTAGGTGAGGGTATCTCCC
TATATCATTACGTGATATATAGGAAATAG

Upstream 100 bases:

>100_bases
AAGCTCAAGTTTCGGTAGCTCCGTTAGCGATAAAACTACAGTGCAAGAAACTGAGAATCCTTTTTAGTCATAAGTCCAAC
GTTTAATACTTTTTACCTTT

Downstream 100 bases:

>100_bases
GGCGGTCCTTTATGATTAATGTTGGTTTTTATTATAAGGTTAAGAGAGGTTTTGAGAAGGATTTTGAGAATAAGTTTAAG
GAAGTTTTAAGTTATTTGAG

Product: quinol oxidase (SoxABC), cytochrome B subunit, putative (soxC-like)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 542; Mature: 541

Protein sequence:

>542_residues
MTSFILMSSKLSDWFKERLGLDDLPFFRTPDYMYKVDYWLGALVASAFIYTVITGLILLLYYNAQAGYNSTEFVINSVPY
GSVVLYSHLYGAYAMIILAYIHMFRNYFAGAYKKPRELLWIIGVIMLILTLGTAFLGYSLIGDALATSAVDVGEGIISSV
PGLSIFIPFLFGNYDAGDYGRVLAWHIILTALIGLLFVFHFFLAEHYGMMPSRKVKDKVPAVYAKEEWQKFNPWWPRNFV
YMMSLIFLTWGFILIIPNAFAYLNGLPQQLNPFLNPKPAPPPNSPAAAHITTYPPWFFLFLYKIADFTSDVVIFLFIGVI
IPLIYLIIVPFLDRTEYLHPMKRKVFVGIGILIVTYLTQTTIWGDLTPGVEIPVSQQVLVYLPPAIIVALGLAAIRPKTD
NKGNIKGTIGPITALAFILVSSLFIIAGIELLANPTILTVGVFIPIAGIFILTTKKIAPIALNAEQRSENASVSEERAPE
WKKKLAEGLVALLFIYAIILAAQIWTIPATGYFSNLFGIDLGLILLMLGEGISLYHYVIYRK

Sequences:

>Translated_542_residues
MTSFILMSSKLSDWFKERLGLDDLPFFRTPDYMYKVDYWLGALVASAFIYTVITGLILLLYYNAQAGYNSTEFVINSVPY
GSVVLYSHLYGAYAMIILAYIHMFRNYFAGAYKKPRELLWIIGVIMLILTLGTAFLGYSLIGDALATSAVDVGEGIISSV
PGLSIFIPFLFGNYDAGDYGRVLAWHIILTALIGLLFVFHFFLAEHYGMMPSRKVKDKVPAVYAKEEWQKFNPWWPRNFV
YMMSLIFLTWGFILIIPNAFAYLNGLPQQLNPFLNPKPAPPPNSPAAAHITTYPPWFFLFLYKIADFTSDVVIFLFIGVI
IPLIYLIIVPFLDRTEYLHPMKRKVFVGIGILIVTYLTQTTIWGDLTPGVEIPVSQQVLVYLPPAIIVALGLAAIRPKTD
NKGNIKGTIGPITALAFILVSSLFIIAGIELLANPTILTVGVFIPIAGIFILTTKKIAPIALNAEQRSENASVSEERAPE
WKKKLAEGLVALLFIYAIILAAQIWTIPATGYFSNLFGIDLGLILLMLGEGISLYHYVIYRK
>Mature_541_residues
TSFILMSSKLSDWFKERLGLDDLPFFRTPDYMYKVDYWLGALVASAFIYTVITGLILLLYYNAQAGYNSTEFVINSVPYG
SVVLYSHLYGAYAMIILAYIHMFRNYFAGAYKKPRELLWIIGVIMLILTLGTAFLGYSLIGDALATSAVDVGEGIISSVP
GLSIFIPFLFGNYDAGDYGRVLAWHIILTALIGLLFVFHFFLAEHYGMMPSRKVKDKVPAVYAKEEWQKFNPWWPRNFVY
MMSLIFLTWGFILIIPNAFAYLNGLPQQLNPFLNPKPAPPPNSPAAAHITTYPPWFFLFLYKIADFTSDVVIFLFIGVII
PLIYLIIVPFLDRTEYLHPMKRKVFVGIGILIVTYLTQTTIWGDLTPGVEIPVSQQVLVYLPPAIIVALGLAAIRPKTDN
KGNIKGTIGPITALAFILVSSLFIIAGIELLANPTILTVGVFIPIAGIFILTTKKIAPIALNAEQRSENASVSEERAPEW
KKKLAEGLVALLFIYAIILAAQIWTIPATGYFSNLFGIDLGLILLMLGEGISLYHYVIYRK

Specific function: Binds 2 heme groups (b586 and b606) which are not covalently bound to the protein [H]

COG id: COG1290

COG function: function code C; Cytochrome b subunit of the bc complex

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b family [H]

Homologues:

Organism=Homo sapiens, GI251831119, Length=173, Percent_Identity=27.1676300578035, Blast_Score=70, Evalue=5e-12,
Organism=Saccharomyces cerevisiae, GI6226529, Length=314, Percent_Identity=23.8853503184713, Blast_Score=78, Evalue=4e-15,
Organism=Saccharomyces cerevisiae, GI6226532, Length=173, Percent_Identity=27.7456647398844, Blast_Score=73, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6226531, Length=167, Percent_Identity=27.5449101796407, Blast_Score=73, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6226530, Length=110, Percent_Identity=32.7272727272727, Blast_Score=67, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016175
- InterPro:   IPR005798
- InterPro:   IPR005797
- InterPro:   IPR016174 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 60620; Mature: 60489

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: PS51002 CYTB_NTER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CC
>Mature Secondary Structure 
TSFILMSSKLSDWFKERLGLDDLPFFRTPDYMYKVDYWLGALVASAFIYTVITGLILLL
CCEEEHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YYNAQAGYNSTEFVINSVPYGSVVLYSHLYGAYAMIILAYIHMFRNYFAGAYKKPRELLW
HHCCCCCCCCCHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
IIGVIMLILTLGTAFLGYSLIGDALATSAVDVGEGIISSVPGLSIFIPFLFGNYDAGDYG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHH
RVLAWHIILTALIGLLFVFHFFLAEHYGMMPSRKVKDKVPAVYAKEEWQKFNPWWPRNFV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHCCCCCCCHHHH
YMMSLIFLTWGFILIIPNAFAYLNGLPQQLNPFLNPKPAPPPNSPAAAHITTYPPWFFLF
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCEEEECCCHHHHHH
LYKIADFTSDVVIFLFIGVIIPLIYLIIVPFLDRTEYLHPMKRKVFVGIGILIVTYLTQT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
TIWGDLTPGVEIPVSQQVLVYLPPAIIVALGLAAIRPKTDNKGNIKGTIGPITALAFILV
HHCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH
SSLFIIAGIELLANPTILTVGVFIPIAGIFILTTKKIAPIALNAEQRSENASVSEERAPE
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCHHCCCCCCCCHHCCHH
WKKKLAEGLVALLFIYAIILAAQIWTIPATGYFSNLFGIDLGLILLMLGEGISLYHYVIY
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEE
RK
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1372250 [H]