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The map label for this gene is hycF [C]

Identifier: 15899510

GI number: 15899510

Start: 2549761

End: 2551257

Strand: Reverse

Name: hycF [C]

Synonym: SSO2792

Alternate gene names: 15899510

Gene position: 2551257-2549761 (Counterclockwise)

Preceding gene: 15899511

Following gene: 15899509

Centisome position: 85.26

GC content: 37.68

Gene sequence:

>1497_bases
ATGCTAAACGCTGGGTTAATAGTATCGAAAAAAGCTAGAGAGATAATAGGAGATGAAATACTAAAAGAGGTTTTTGAAGA
GGCTAAATTATCCTACGTTGCAGAGATGGGCGATTACGTAATTGATGACATCAATAACAACGAATTAAAGGCTCTGCTAC
TCGTAAGTGAAAATGGGAAAGAGAGATGGATGGAAGATATAGACCAGAAGTTAGGAATTTCTCCATTAGCTATTCTTACA
ATACCTCCTAAGTGGTTTATAGGTAAGAGTAAGGAGTATATCTTTACCTTACTTACAGCGTATTCATTAAGGGTAGAGTT
AATGGATTTAGCCTATAGAGTTCAACCCACTCCCACTTCTTCAGTTTCCAGAAGATCATTACTTAAATTGAAAACTTATG
AATACAAACCTTACCCCGTATTATTCGATGAAGTCCATGCAAAGAGGGAAATAAATAAAGCAATAGAATCATGTCCACAA
GGCTTAATAGTAAAAGCCCCAGAAGGACCATCAGTAGGTTATCCAGAGAAGTGCAGTGTATGTGGATATTGCTCCGCGAG
CTCATATTTAGGATATCTTGAAATTCCAACAGCAACTACGGATCAAGTTTTAAGTTTCATTAATACTATAGTTAGACACT
ATAGGGATAAACAAGCAGCAATACTATTCACAGATTCGATAATTGACGATATACCAGAAGGCATATTCCCATTCTTAATG
CCTTGTACTGCAGGGGTTCACGACTCATTTGTTCTAGCCTCATATGCTGCAGGGATAACTCCCATAGTTCACGTATCCTC
TAAATGCGAAAGTAGGGATATCGCATTGAAGAGACTAGACGAATTACCATCCCATTTTCCCGGTACTAATTTCATCATTA
GTAAGGTTAGAAATGACGAGGAGCTTAAAAAAACACTGTCCTATATTAAGCCAATACAGCTTAGTAGATCTGAAATACCA
CTCGAAGTTATTTTGCAGCGTAGTAGGAGAAGGGCACTTCTAATATGGTCAATTGAGGAGATGTCGAAGAAGGTTAAATT
GAATGAGGACGATACAGTCCCTGGAGTTTATAACGTAGAAGTAGATCCAAATAAGTGCGTACTGTGCGGAGTATGCGTTA
GGGCTTGTCAAATGTTAGTTCCTGAACTAAAGGGTAGTAGCACATTAGAGTTAAGCTATAATATACCTTATTGCATAGGC
TCTCAACGATGTGTTAAGAACTGCCCAGAAAAAGCTGTAATCGTGACTGGTTACGCTAAGATTTCTGACCTTAAGAGGAA
AATTGTTAATAAGGCAAATGTGAGTAAATGTAGATTCTGTGGAAAGCCATTGGGTTCAGAGAGAATTAAGAACAAGGTTG
ATACACTACTGATACAATATGGATTTGCTGGAACTGCACAATATACCGATGTTTGTAATGAGTGTAAGCAAAAGATATTA
ACTAAGATCTGGCTAGAGAGACTGTTAAGTGGGAAAAATGATACCGTACGTTATTGA

Upstream 100 bases:

>100_bases
GTGACGTAATTAACGATCCAAGGTCGAGTATATACAAGGTTGTTTGTTCTGAATTAGCTAAATTTCTTAGATTCGAGAGA
AAATATTTAGGTGTGAATTA

Downstream 100 bases:

>100_bases
CTTAGACGCGATTTTTGATCTTTCCTCTATTGAAATCTATAGACTACTTACTTCATCGCTCTCGAATGTAAGATACTATC
CGCCTAAGGATCTATTGAAG

Product: hypothetical protein

Products: CO2; H2; oxidized ferredoxin + [C]

Alternate protein names: NA

Number of amino acids: Translated: 498; Mature: 498

Protein sequence:

>498_residues
MLNAGLIVSKKAREIIGDEILKEVFEEAKLSYVAEMGDYVIDDINNNELKALLLVSENGKERWMEDIDQKLGISPLAILT
IPPKWFIGKSKEYIFTLLTAYSLRVELMDLAYRVQPTPTSSVSRRSLLKLKTYEYKPYPVLFDEVHAKREINKAIESCPQ
GLIVKAPEGPSVGYPEKCSVCGYCSASSYLGYLEIPTATTDQVLSFINTIVRHYRDKQAAILFTDSIIDDIPEGIFPFLM
PCTAGVHDSFVLASYAAGITPIVHVSSKCESRDIALKRLDELPSHFPGTNFIISKVRNDEELKKTLSYIKPIQLSRSEIP
LEVILQRSRRRALLIWSIEEMSKKVKLNEDDTVPGVYNVEVDPNKCVLCGVCVRACQMLVPELKGSSTLELSYNIPYCIG
SQRCVKNCPEKAVIVTGYAKISDLKRKIVNKANVSKCRFCGKPLGSERIKNKVDTLLIQYGFAGTAQYTDVCNECKQKIL
TKIWLERLLSGKNDTVRY

Sequences:

>Translated_498_residues
MLNAGLIVSKKAREIIGDEILKEVFEEAKLSYVAEMGDYVIDDINNNELKALLLVSENGKERWMEDIDQKLGISPLAILT
IPPKWFIGKSKEYIFTLLTAYSLRVELMDLAYRVQPTPTSSVSRRSLLKLKTYEYKPYPVLFDEVHAKREINKAIESCPQ
GLIVKAPEGPSVGYPEKCSVCGYCSASSYLGYLEIPTATTDQVLSFINTIVRHYRDKQAAILFTDSIIDDIPEGIFPFLM
PCTAGVHDSFVLASYAAGITPIVHVSSKCESRDIALKRLDELPSHFPGTNFIISKVRNDEELKKTLSYIKPIQLSRSEIP
LEVILQRSRRRALLIWSIEEMSKKVKLNEDDTVPGVYNVEVDPNKCVLCGVCVRACQMLVPELKGSSTLELSYNIPYCIG
SQRCVKNCPEKAVIVTGYAKISDLKRKIVNKANVSKCRFCGKPLGSERIKNKVDTLLIQYGFAGTAQYTDVCNECKQKIL
TKIWLERLLSGKNDTVRY
>Mature_498_residues
MLNAGLIVSKKAREIIGDEILKEVFEEAKLSYVAEMGDYVIDDINNNELKALLLVSENGKERWMEDIDQKLGISPLAILT
IPPKWFIGKSKEYIFTLLTAYSLRVELMDLAYRVQPTPTSSVSRRSLLKLKTYEYKPYPVLFDEVHAKREINKAIESCPQ
GLIVKAPEGPSVGYPEKCSVCGYCSASSYLGYLEIPTATTDQVLSFINTIVRHYRDKQAAILFTDSIIDDIPEGIFPFLM
PCTAGVHDSFVLASYAAGITPIVHVSSKCESRDIALKRLDELPSHFPGTNFIISKVRNDEELKKTLSYIKPIQLSRSEIP
LEVILQRSRRRALLIWSIEEMSKKVKLNEDDTVPGVYNVEVDPNKCVLCGVCVRACQMLVPELKGSSTLELSYNIPYCIG
SQRCVKNCPEKAVIVTGYAKISDLKRKIVNKANVSKCRFCGKPLGSERIKNKVDTLLIQYGFAGTAQYTDVCNECKQKIL
TKIWLERLLSGKNDTVRY

Specific function: Probable Electron Transfer Protein For Hydrogenase 3 [C]

COG id: COG1145

COG function: function code C; Ferredoxin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 55996; Mature: 55996

Theoretical pI: Translated: 8.27; Mature: 8.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNAGLIVSKKAREIIGDEILKEVFEEAKLSYVAEMGDYVIDDINNNELKALLLVSENGK
CCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCEEEEEEEECCCH
ERWMEDIDQKLGISPLAILTIPPKWFIGKSKEYIFTLLTAYSLRVELMDLAYRVQPTPTS
HHHHHHHHHHHCCCCEEEEEECCHHCCCCCHHHHHHHHHHHHHHHHHHHHHEEECCCCCC
SVSRRSLLKLKTYEYKPYPVLFDEVHAKREINKAIESCPQGLIVKAPEGPSVGYPEKCSV
HHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCE
CGYCSASSYLGYLEIPTATTDQVLSFINTIVRHYRDKQAAILFTDSIIDDIPEGIFPFLM
ECCCCHHCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHH
PCTAGVHDSFVLASYAAGITPIVHVSSKCESRDIALKRLDELPSHFPGTNFIISKVRNDE
HHCCCCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCHH
ELKKTLSYIKPIQLSRSEIPLEVILQRSRRRALLIWSIEEMSKKVKLNEDDTVPGVYNVE
HHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCEEEEEEHHHHHHHEECCCCCCCCCEEEEE
VDPNKCVLCGVCVRACQMLVPELKGSSTLELSYNIPYCIGSQRCVKNCPEKAVIVTGYAK
ECCCCEEHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEECCCHHHHCCCCCEEEEECHHH
ISDLKRKIVNKANVSKCRFCGKPLGSERIKNKVDTLLIQYGFAGTAQYTDVCNECKQKIL
HHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
TKIWLERLLSGKNDTVRY
HHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MLNAGLIVSKKAREIIGDEILKEVFEEAKLSYVAEMGDYVIDDINNNELKALLLVSENGK
CCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCEEEEEEEECCCH
ERWMEDIDQKLGISPLAILTIPPKWFIGKSKEYIFTLLTAYSLRVELMDLAYRVQPTPTS
HHHHHHHHHHHCCCCEEEEEECCHHCCCCCHHHHHHHHHHHHHHHHHHHHHEEECCCCCC
SVSRRSLLKLKTYEYKPYPVLFDEVHAKREINKAIESCPQGLIVKAPEGPSVGYPEKCSV
HHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCE
CGYCSASSYLGYLEIPTATTDQVLSFINTIVRHYRDKQAAILFTDSIIDDIPEGIFPFLM
ECCCCHHCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHH
PCTAGVHDSFVLASYAAGITPIVHVSSKCESRDIALKRLDELPSHFPGTNFIISKVRNDE
HHCCCCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCHH
ELKKTLSYIKPIQLSRSEIPLEVILQRSRRRALLIWSIEEMSKKVKLNEDDTVPGVYNVE
HHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCEEEEEEHHHHHHHEECCCCCCCCCEEEEE
VDPNKCVLCGVCVRACQMLVPELKGSSTLELSYNIPYCIGSQRCVKNCPEKAVIVTGYAK
ECCCCEEHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEECCCHHHHCCCCCEEEEECHHH
ISDLKRKIVNKANVSKCRFCGKPLGSERIKNKVDTLLIQYGFAGTAQYTDVCNECKQKIL
HHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
TKIWLERLLSGKNDTVRY
HHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: formate; Proton; reduced ferredoxin [C]

Specific reaction: formate = CO2 + H2 Proton + reduced ferredoxin = H2 + oxidized ferredoxin [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA