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The map label for this gene is soxC [H]

Identifier: 15899379

GI number: 15899379

Start: 2413574

End: 2415247

Strand: Reverse

Name: soxC [H]

Synonym: SSO2656

Alternate gene names: 15899379

Gene position: 2415247-2413574 (Counterclockwise)

Preceding gene: 15899380

Following gene: 15899378

Centisome position: 80.72

GC content: 36.98

Gene sequence:

>1674_bases
ATGGGTGAGGAAAAAAAAGGTATTATAGATACGATAATTGATAGAGTAGGTGTAACTGAAGCGCCATTATTTAAGACACC
GGATTACATGTATAATATATCCTATTGGCTAGGTGCAATGGTAGCTGCGGCTTTCATATATACTGTTATAACTGGTCTAT
TCCTCTTAATGTATTATCAACCAGCCTACGCGTACCAGTCAACACAAAGTATAATTTCCAGCGTTCCGTATGGCCCAGTC
TTATTATTTAGTCACTTATATGGAGCATACATTATGATTATCTTGGCATATATACACATGTTCAGAAACTTCTATAAGGG
GGCTTATAAAAAACCAAGAGAATTACAATGGATAACTGGAGTGATTCTATTATTGTTAACACTAGGGGCATCATTCTTCG
GATATAGCTTAGTCAGTGATGTTCTTGGAGTCAATGCGATAGATATTGGAGATCAGTTATTAGTTGGTACTGGTATACCT
GGCGCAACAACCATAGTAGGTTGGTTATTTGGTCCTGGAGGAAGTGCTGCATTATCATCAGATCCATTAGTGAGATCCGA
ATTATTTGATAGATTGTTAGGATGGCATATATTGTTGGTATTTCTACTGGGAGTTCTATTCCTATTTCACTTCATGTTAG
CGGAGAGATATGGAATGACACCCTCAGCTAGGGATAAACCTAAAGTCCCCGCATACTACACGAAAGAAGAACAGCAGAGA
TTTAATGAATGGTGGCCTAGAAACTTTGTTTATATGTTATCAATCGTATTATTAACATGGGGTATAATACTATTTGTTCC
TAACTTACTAGCAAATATCAATGGATTACCAATAGTTATAAATCCTTACCCGGCCCCACAAGCGGGATCACCAGAGTCTA
CCAGTGTACAACCATATCCCCCATGGTTCTTCTTATTCCTCTACAAGTTTGTTGACTTCCTTCTACCTAATGGAATGCCA
ATAACTCCAATATTGGTTTTAGCAGTTCTCATTATAGGTCTTCTAATTCTAATATTCCTTCCCTTCTTGGATCCCAGTGA
CGATTTACGTGTTACTAAAAGAAAGTTCTGGACTTGGATAGTTTCTACTTTGGCGATATATCTCATAGAACTATCAGTAT
GGGGATACTTGGAACCTGGTGTTCCAGTTCCATTCTCACAAGAGATAGAATACTTAGGTTTACCGTTAGTTATTATAGGG
ATAATTGTATACTTATGGCCAGTAAAACAAGGTAATACCCCAGTTTCAAAATCTGAGACTAAAGTAATTAAAATGAACAT
TACTCCTATGGAAATACTGTTAGCTAGTGTATCCTCCTTATCCTTGGCAGGAACATTTGTAAACTTCTTAGAATTTCCTA
CTGTCGTGAATGGAATCATTTTAATACCAGTTATATTACTTACAATATACATGTTAAGAAGAGTCGCCGCTTTTATACTT
GGGAGAAAACCAGTAGCCGCTATAGGTAACAATATAGCGACCAGTTGGAGCAAGAAAGCCGCATTTTATGGAATTATAAT
AATTTTCATTGTTTCCTTATTATTATTGGGCCTAATGTGGACCTTACCGAGTATAGGACCGCAGTCAACGTATGCTGGAA
TGGACCTAGGCGTAATCTTAATGCTATGGGGGATAGCAGTTCAACTTTATCATTATGAAATTTATGTTAAATAG

Upstream 100 bases:

>100_bases
GCATTGGCTTATGCTTCTAAACAAGGTATTTTTTCATCTCCTTCTCCCTCAACTTCTCCCTCTAATTTACCCGTAATGGC
TAAAGATGGGGTGAAAAACA

Downstream 100 bases:

>100_bases
TGGGGTGGGATAAATGAATAAGTTAGGTATTGCAATTTTGGCTCTAATATTCGGAGCTACAGCGTTCATGGCTGGGTTTA
TGGCATATAATTTGCTATGG

Product: quinol oxidase (SoxABC), cytochrome B subunit (soxC)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 557; Mature: 556

Protein sequence:

>557_residues
MGEEKKGIIDTIIDRVGVTEAPLFKTPDYMYNISYWLGAMVAAAFIYTVITGLFLLMYYQPAYAYQSTQSIISSVPYGPV
LLFSHLYGAYIMIILAYIHMFRNFYKGAYKKPRELQWITGVILLLLTLGASFFGYSLVSDVLGVNAIDIGDQLLVGTGIP
GATTIVGWLFGPGGSAALSSDPLVRSELFDRLLGWHILLVFLLGVLFLFHFMLAERYGMTPSARDKPKVPAYYTKEEQQR
FNEWWPRNFVYMLSIVLLTWGIILFVPNLLANINGLPIVINPYPAPQAGSPESTSVQPYPPWFFLFLYKFVDFLLPNGMP
ITPILVLAVLIIGLLILIFLPFLDPSDDLRVTKRKFWTWIVSTLAIYLIELSVWGYLEPGVPVPFSQEIEYLGLPLVIIG
IIVYLWPVKQGNTPVSKSETKVIKMNITPMEILLASVSSLSLAGTFVNFLEFPTVVNGIILIPVILLTIYMLRRVAAFIL
GRKPVAAIGNNIATSWSKKAAFYGIIIIFIVSLLLLGLMWTLPSIGPQSTYAGMDLGVILMLWGIAVQLYHYEIYVK

Sequences:

>Translated_557_residues
MGEEKKGIIDTIIDRVGVTEAPLFKTPDYMYNISYWLGAMVAAAFIYTVITGLFLLMYYQPAYAYQSTQSIISSVPYGPV
LLFSHLYGAYIMIILAYIHMFRNFYKGAYKKPRELQWITGVILLLLTLGASFFGYSLVSDVLGVNAIDIGDQLLVGTGIP
GATTIVGWLFGPGGSAALSSDPLVRSELFDRLLGWHILLVFLLGVLFLFHFMLAERYGMTPSARDKPKVPAYYTKEEQQR
FNEWWPRNFVYMLSIVLLTWGIILFVPNLLANINGLPIVINPYPAPQAGSPESTSVQPYPPWFFLFLYKFVDFLLPNGMP
ITPILVLAVLIIGLLILIFLPFLDPSDDLRVTKRKFWTWIVSTLAIYLIELSVWGYLEPGVPVPFSQEIEYLGLPLVIIG
IIVYLWPVKQGNTPVSKSETKVIKMNITPMEILLASVSSLSLAGTFVNFLEFPTVVNGIILIPVILLTIYMLRRVAAFIL
GRKPVAAIGNNIATSWSKKAAFYGIIIIFIVSLLLLGLMWTLPSIGPQSTYAGMDLGVILMLWGIAVQLYHYEIYVK
>Mature_556_residues
GEEKKGIIDTIIDRVGVTEAPLFKTPDYMYNISYWLGAMVAAAFIYTVITGLFLLMYYQPAYAYQSTQSIISSVPYGPVL
LFSHLYGAYIMIILAYIHMFRNFYKGAYKKPRELQWITGVILLLLTLGASFFGYSLVSDVLGVNAIDIGDQLLVGTGIPG
ATTIVGWLFGPGGSAALSSDPLVRSELFDRLLGWHILLVFLLGVLFLFHFMLAERYGMTPSARDKPKVPAYYTKEEQQRF
NEWWPRNFVYMLSIVLLTWGIILFVPNLLANINGLPIVINPYPAPQAGSPESTSVQPYPPWFFLFLYKFVDFLLPNGMPI
TPILVLAVLIIGLLILIFLPFLDPSDDLRVTKRKFWTWIVSTLAIYLIELSVWGYLEPGVPVPFSQEIEYLGLPLVIIGI
IVYLWPVKQGNTPVSKSETKVIKMNITPMEILLASVSSLSLAGTFVNFLEFPTVVNGIILIPVILLTIYMLRRVAAFILG
RKPVAAIGNNIATSWSKKAAFYGIIIIFIVSLLLLGLMWTLPSIGPQSTYAGMDLGVILMLWGIAVQLYHYEIYVK

Specific function: Binds 2 heme groups (b586 and b606) which are not covalently bound to the protein [H]

COG id: COG1290

COG function: function code C; Cytochrome b subunit of the bc complex

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b family [H]

Homologues:

Organism=Homo sapiens, GI251831119, Length=216, Percent_Identity=30.0925925925926, Blast_Score=76, Evalue=8e-14,
Organism=Saccharomyces cerevisiae, GI6226529, Length=325, Percent_Identity=24.6153846153846, Blast_Score=75, Evalue=3e-14,
Organism=Saccharomyces cerevisiae, GI6226532, Length=192, Percent_Identity=27.6041666666667, Blast_Score=70, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6226531, Length=172, Percent_Identity=27.3255813953488, Blast_Score=65, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016175
- InterPro:   IPR005798
- InterPro:   IPR005797
- InterPro:   IPR016174 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 62370; Mature: 62239

Theoretical pI: Translated: 8.72; Mature: 8.72

Prosite motif: PS51002 CYTB_NTER ; PS51003 CYTB_CTER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHEEEEEC
>Mature Secondary Structure 
GEEKKGIIDTIIDRVGVTEAPLFKTPDYMYNISYWLGAMVAAAFIYTVITGLFLLMYYQ
CCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PAYAYQSTQSIISSVPYGPVLLFSHLYGAYIMIILAYIHMFRNFYKGAYKKPRELQWITG
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
VILLLLTLGASFFGYSLVSDVLGVNAIDIGDQLLVGTGIPGATTIVGWLFGPGGSAALSS
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHCCCCCCCCCCC
DPLVRSELFDRLLGWHILLVFLLGVLFLFHFMLAERYGMTPSARDKPKVPAYYTKEEQQR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHH
FNEWWPRNFVYMLSIVLLTWGIILFVPNLLANINGLPIVINPYPAPQAGSPESTSVQPYP
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCC
PWFFLFLYKFVDFLLPNGMPITPILVLAVLIIGLLILIFLPFLDPSDDLRVTKRKFWTWI
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
VSTLAIYLIELSVWGYLEPGVPVPFSQEIEYLGLPLVIIGIIVYLWPVKQGNTPVSKSET
HHHHHHHHHHHHHHCCCCCCCCCCCHHCHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
KVIKMNITPMEILLASVSSLSLAGTFVNFLEFPTVVNGIILIPVILLTIYMLRRVAAFIL
EEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GRKPVAAIGNNIATSWSKKAAFYGIIIIFIVSLLLLGLMWTLPSIGPQSTYAGMDLGVIL
CCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
MLWGIAVQLYHYEIYVK
HHHHHHHHHHHEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1372250 [H]