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The map label for this gene is 15899195

Identifier: 15899195

GI number: 15899195

Start: 2222038

End: 2223468

Strand: Direct

Name: 15899195

Synonym: SSO2450

Alternate gene names: NA

Gene position: 2222038-2223468 (Clockwise)

Preceding gene: 15899192

Following gene: 15899196

Centisome position: 74.26

GC content: 37.32

Gene sequence:

>1431_bases
TTGTGTCATAATATAAAACCTCACAGATTTAGAGTTAATCTCAAAAACTTTATTATATATTATTACTGTGAGATGTCGGA
GATACGTGAGTTAAAGAAACCTATACGTGAAAAAGCGAGTATTCATAGCCATATTAAAGGTTTAGGCTTGGATAGTAATG
GGAAAGCGAAATTTATTGCAGATGGGCTGGTTGGCCAAGCTGAGGCCAGAGAGGCAGCAGGGGTTGTTGTACAACTAATA
AAACAAGGAAAGATGTCCGGAAAAGGGATACTATTTGTTGGCCCTCCGGGAACCGGAAAAACCGCATTAGCTGTAGCAAT
TGCCAGGGAATTAGGTGAGGATACTCCATTTACTGCAATTAATGCTTCTGAAATATACTCTACAGAACTTAAGAAAACTG
AAATATTAACTCAATTAATAAGGAAATCAATCGGTGTGAGAATTAGAGAAAAAAGGCTAGTGTACGAAGGTGTCGTGAAA
GATAGGAAGATTAAGGTTGCCAGAAGTAGACTAAATCCCTATTCTCAGGCTCCAGTTGAGGCTCAAATAACTTTGACTAC
TAAAGATGATGAAAGGACATTATCAGTAGGTGAGGAAATAGCTCAACAACTAGTATCCTTAGGCGTTAAGAAGGGCGATG
TTATCATGATTGATGCTCAAACTGGACAGGTCATAGTTGAAGGAAAGGCTAAAGGTTTTGAGGGTGCCAAAACCTATGAT
ATAGAGACCACGAAAGTGCTAGAGATGCCTACTGGACCTGTGCGAAAAGAAAAGGAAATAACCACTACGCTAACCTTAAA
CGATTTAGATTTGAATTTAGCAGCTAGAAATCTAGCTGTTACGGCTATTTTCTCGTTCTTTACTGAAAGAGAAATAAACG
AGGACGTCAGAAAAGAAGTTGATAGACTAGTTAAGGATTGGATTAATCAAGGTAGGGCGGAATTGGTAGTTGGAGTCCTA
TTTATTGACGACGCTCATACGCTCGATTTAGAAGCGTTCTCATTCCTAACTAGGGCTCTAGAGTCTGAATTAGCACCAAT
ACTGATCTTAGCAACCAACAGGGGGCTAACTAAAATTAGAGGAACTGATATAGAATCGCCTCATGGGATTCCTCTTGACC
TATTGGATAGACTGCTGATAATACCAACTAGACCTTACAATGCTGATGAAATTAAAGAAATAATCAAGATTAGAGCTGAT
GAATTAGAAATTGAATTAGATCCTCAAGCTTTAGAGGAATTAACTAAAATAGGTGTTGAAAATAGTTTGAGATACTCTGT
TCAACTGTTAGAACCATCTCTTATAATTGCTCAAAGAAATAATAGGAGTATTATAAAGGTTGAAGATGTAGTGATAGCTT
CAAAGCTATTCTCAGATGTTAAGAGAAGTGTAAAGTTTGTAAAGGAGTATGAGAATCTATTATTGAAATGA

Upstream 100 bases:

>100_bases
CTTCATCACATGTTATCTTTACATAATGTTATATTAATAAAGCTTACATTATTCTGGTGATTTAACGTGCAATCAAAACT
CTTGTTCTCTCACAGACAAG

Downstream 100 bases:

>100_bases
TGTCTGGTGACGGCTCTGAGCCAGTGATGTCGCCAAAAAGTCTGATCAATATTTTTTAAATATCCAAAAACTTAGATTCT
AGTGTGAAAGTAGGTTTAGT

Product: TATA binding protein (TBP)-interacting protein (TIP49-like), putative

Products: NA

Alternate protein names: TIP49 Domain Protein; TIP49-Like Protein; TIP49 Domain-Containing Protein; Tbp-Interacting Protein Tip; DNA Helicase; TIP49-Like; TBP-Interacting Proten; TIP49 C-Terminal Domain Family Protein; DNA Helicase TIP

Number of amino acids: Translated: 476; Mature: 476

Protein sequence:

>476_residues
MCHNIKPHRFRVNLKNFIIYYYCEMSEIRELKKPIREKASIHSHIKGLGLDSNGKAKFIADGLVGQAEAREAAGVVVQLI
KQGKMSGKGILFVGPPGTGKTALAVAIARELGEDTPFTAINASEIYSTELKKTEILTQLIRKSIGVRIREKRLVYEGVVK
DRKIKVARSRLNPYSQAPVEAQITLTTKDDERTLSVGEEIAQQLVSLGVKKGDVIMIDAQTGQVIVEGKAKGFEGAKTYD
IETTKVLEMPTGPVRKEKEITTTLTLNDLDLNLAARNLAVTAIFSFFTEREINEDVRKEVDRLVKDWINQGRAELVVGVL
FIDDAHTLDLEAFSFLTRALESELAPILILATNRGLTKIRGTDIESPHGIPLDLLDRLLIIPTRPYNADEIKEIIKIRAD
ELEIELDPQALEELTKIGVENSLRYSVQLLEPSLIIAQRNNRSIIKVEDVVIASKLFSDVKRSVKFVKEYENLLLK

Sequences:

>Translated_476_residues
MCHNIKPHRFRVNLKNFIIYYYCEMSEIRELKKPIREKASIHSHIKGLGLDSNGKAKFIADGLVGQAEAREAAGVVVQLI
KQGKMSGKGILFVGPPGTGKTALAVAIARELGEDTPFTAINASEIYSTELKKTEILTQLIRKSIGVRIREKRLVYEGVVK
DRKIKVARSRLNPYSQAPVEAQITLTTKDDERTLSVGEEIAQQLVSLGVKKGDVIMIDAQTGQVIVEGKAKGFEGAKTYD
IETTKVLEMPTGPVRKEKEITTTLTLNDLDLNLAARNLAVTAIFSFFTEREINEDVRKEVDRLVKDWINQGRAELVVGVL
FIDDAHTLDLEAFSFLTRALESELAPILILATNRGLTKIRGTDIESPHGIPLDLLDRLLIIPTRPYNADEIKEIIKIRAD
ELEIELDPQALEELTKIGVENSLRYSVQLLEPSLIIAQRNNRSIIKVEDVVIASKLFSDVKRSVKFVKEYENLLLK
>Mature_476_residues
MCHNIKPHRFRVNLKNFIIYYYCEMSEIRELKKPIREKASIHSHIKGLGLDSNGKAKFIADGLVGQAEAREAAGVVVQLI
KQGKMSGKGILFVGPPGTGKTALAVAIARELGEDTPFTAINASEIYSTELKKTEILTQLIRKSIGVRIREKRLVYEGVVK
DRKIKVARSRLNPYSQAPVEAQITLTTKDDERTLSVGEEIAQQLVSLGVKKGDVIMIDAQTGQVIVEGKAKGFEGAKTYD
IETTKVLEMPTGPVRKEKEITTTLTLNDLDLNLAARNLAVTAIFSFFTEREINEDVRKEVDRLVKDWINQGRAELVVGVL
FIDDAHTLDLEAFSFLTRALESELAPILILATNRGLTKIRGTDIESPHGIPLDLLDRLLIIPTRPYNADEIKEIIKIRAD
ELEIELDPQALEELTKIGVENSLRYSVQLLEPSLIIAQRNNRSIIKVEDVVIASKLFSDVKRSVKFVKEYENLLLK

Specific function: Unknown

COG id: COG1224

COG function: function code K; DNA helicase TIP49, TBP-interacting protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI5730023, Length=451, Percent_Identity=43.4589800443459, Blast_Score=372, Evalue=1e-103,
Organism=Homo sapiens, GI4506753, Length=458, Percent_Identity=44.9781659388646, Blast_Score=364, Evalue=1e-100,
Organism=Caenorhabditis elegans, GI17542510, Length=435, Percent_Identity=42.7586206896552, Blast_Score=347, Evalue=9e-96,
Organism=Caenorhabditis elegans, GI17558290, Length=452, Percent_Identity=38.2743362831858, Blast_Score=296, Evalue=2e-80,
Organism=Saccharomyces cerevisiae, GI6325021, Length=433, Percent_Identity=45.0346420323326, Blast_Score=361, Evalue=1e-100,
Organism=Saccharomyces cerevisiae, GI6320396, Length=444, Percent_Identity=45.2702702702703, Blast_Score=358, Evalue=1e-99,
Organism=Drosophila melanogaster, GI17737635, Length=439, Percent_Identity=44.1913439635535, Blast_Score=367, Evalue=1e-102,
Organism=Drosophila melanogaster, GI21358125, Length=457, Percent_Identity=44.6389496717724, Blast_Score=334, Evalue=6e-92,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 53202; Mature: 53202

Theoretical pI: Translated: 8.17; Mature: 8.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCHNIKPHRFRVNLKNFIIYYYCEMSEIRELKKPIREKASIHSHIKGLGLDSNGKAKFIA
CCCCCCCCEEEEEHHHEEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE
DGLVGQAEAREAAGVVVQLIKQGKMSGKGILFVGPPGTGKTALAVAIARELGEDTPFTAI
CCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEE
NASEIYSTELKKTEILTQLIRKSIGVRIREKRLVYEGVVKDRKIKVARSRLNPYSQAPVE
CHHHHHHHHHHHHHHHHHHHHHHHCCEEHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCE
AQITLTTKDDERTLSVGEEIAQQLVSLGVKKGDVIMIDAQTGQVIVEGKAKGFEGAKTYD
EEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEECCCCCCCCCEEEC
IETTKVLEMPTGPVRKEKEITTTLTLNDLDLNLAARNLAVTAIFSFFTEREINEDVRKEV
CCCEEEEECCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH
DRLVKDWINQGRAELVVGVLFIDDAHTLDLEAFSFLTRALESELAPILILATNRGLTKIR
HHHHHHHHHCCCHHEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCEEEC
GTDIESPHGIPLDLLDRLLIIPTRPYNADEIKEIIKIRADELEIELDPQALEELTKIGVE
CCCCCCCCCCCHHHHCCEEEECCCCCCHHHHHHHHHHHHCCEEEEECHHHHHHHHHCCCC
NSLRYSVQLLEPSLIIAQRNNRSIIKVEDVVIASKLFSDVKRSVKFVKEYENLLLK
CCCEEEEEEECCEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MCHNIKPHRFRVNLKNFIIYYYCEMSEIRELKKPIREKASIHSHIKGLGLDSNGKAKFIA
CCCCCCCCEEEEEHHHEEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE
DGLVGQAEAREAAGVVVQLIKQGKMSGKGILFVGPPGTGKTALAVAIARELGEDTPFTAI
CCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEE
NASEIYSTELKKTEILTQLIRKSIGVRIREKRLVYEGVVKDRKIKVARSRLNPYSQAPVE
CHHHHHHHHHHHHHHHHHHHHHHHCCEEHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCE
AQITLTTKDDERTLSVGEEIAQQLVSLGVKKGDVIMIDAQTGQVIVEGKAKGFEGAKTYD
EEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEECCCCCCCCCEEEC
IETTKVLEMPTGPVRKEKEITTTLTLNDLDLNLAARNLAVTAIFSFFTEREINEDVRKEV
CCCEEEEECCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH
DRLVKDWINQGRAELVVGVLFIDDAHTLDLEAFSFLTRALESELAPILILATNRGLTKIR
HHHHHHHHHCCCHHEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCEEEC
GTDIESPHGIPLDLLDRLLIIPTRPYNADEIKEIIKIRADELEIELDPQALEELTKIGVE
CCCCCCCCCCCHHHHCCEEEECCCCCCHHHHHHHHHHHHCCEEEEECHHHHHHHHHCCCC
NSLRYSVQLLEPSLIIAQRNNRSIIKVEDVVIASKLFSDVKRSVKFVKEYENLLLK
CCCEEEEEEECCEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA